Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0620.Seq
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   1.1  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   4.6  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   6.1  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   6.1  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 187 GIRCQKCLEFGHWSYECK 240
           G++C  C + GH S+EC+
Sbjct: 134 GVKCYSCGKIGHRSFECQ 151


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 289 LCMIRVREGRTRSCVCPCTH 230
           +C I   EG T SCV PC H
Sbjct: 80  ICFI-CAEGITYSCVLPCNH 98


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 181 PQGIRCQKCLEFGHWSYEC 237
           P G  C +C + GHW   C
Sbjct: 180 PPGYICYRCGQKGHWIQAC 198


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 225 PVSKLQALLASYALRKSSSQSCL 157
           PVS L A LA   LR+  ++SC+
Sbjct: 408 PVSSLSATLADRLLRQRIAESCI 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,289
Number of Sequences: 5004
Number of extensions: 26177
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)