Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0620.Seq
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0619 - 4961588-4962409                                           38   0.003
09_01_0032 - 541411-541737,542751-543752                               29   2.0  
05_07_0219 - 28474661-28475146,28475979-28476644                       29   2.0  
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315...    29   2.6  
11_02_0147 - 8791117-8792502                                           28   4.6  
09_06_0188 - 21441377-21442201                                         27   6.0  
06_03_0368 - 19966741-19967204,19967279-19967450                       27   6.0  
04_03_0114 + 11417041-11417188,11418325-11418399,11421007-114211...    27   6.0  
02_05_0489 - 29452520-29453104                                         27   8.0  

>11_01_0619 - 4961588-4962409
          Length = 273

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 193 RCQKCLEFGHWSYECKGKR 249
           +CQKC + GHW+YECK +R
Sbjct: 95  QCQKCFQPGHWTYECKNER 113


>09_01_0032 - 541411-541737,542751-543752
          Length = 442

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 193 RCQKCLEFGHWSYECKGKRK 252
           RC+ CL++GH + +CK  ++
Sbjct: 403 RCEDCLQYGHRTRDCKNNKE 422


>05_07_0219 - 28474661-28475146,28475979-28476644
          Length = 383

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 190 IRCQKCLEFGHWSYECKGKRKI 255
           I C++C +FGH++ EC   RK+
Sbjct: 343 IECRRCGKFGHFADECDEPRKM 364


>01_01_0419 -
           3146851-3147339,3148428-3148663,3148847-3149793,
           3150258-3150356,3151128-3151501
          Length = 714

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 190 IRCQKCLEFGHWSYECKGKRKI 255
           I C +C +FGH++ EC   RK+
Sbjct: 674 IECHRCGKFGHFADECDEPRKM 695


>11_02_0147 - 8791117-8792502
          Length = 461

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +1

Query: 184 QGIRCQKCLEFGHWSYECK-GKRKI*FVLHVH--ESCIRI*KPKKKVNAAMAAARYP 345
           Q I C KC  + H S +CK     I F    H  E CIR  K +KK  A +     P
Sbjct: 115 QRIFCSKCRSYSHLSRDCKLSVFCIIFAKETHRTEDCIR--KNQKKPVAKVVGCAAP 169


>09_06_0188 - 21441377-21442201
          Length = 274

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 193 RCQKCLEFGHWSYEC 237
           RC +C E GH SYEC
Sbjct: 166 RCYECGEEGHLSYEC 180


>06_03_0368 - 19966741-19967204,19967279-19967450
          Length = 211

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 190 IRCQKCLEFGHWSYECKGKRKI 255
           I C +C +FGH++ EC   RK+
Sbjct: 171 IECCRCGKFGHFADECDEPRKM 192


>04_03_0114 +
           11417041-11417188,11418325-11418399,11421007-11421107,
           11422049-11422120,11422239-11422757,11422949-11423149
          Length = 371

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 184 QGIRCQKCLEFGHWSYEC 237
           +G RC KC EFGH    C
Sbjct: 240 KGARCYKCHEFGHIRRNC 257


>02_05_0489 - 29452520-29453104
          Length = 194

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 256 RSCVCPCTHSSSVQTPSTSGILCLEEKQQPELLAFSS 146
           R+   P + SS V  P    I C++   +PEL A ++
Sbjct: 111 RAPASPSSSSSPVAAPLQKNISCIQPSVRPELFAIAA 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,543,661
Number of Sequences: 37544
Number of extensions: 167677
Number of successful extensions: 574
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)