Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0620.Seq
         (487 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.0  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 275 TNHA*ESESQRRRSMQQWQLQDTQQEK 355
           T H   ++  +++  QQ Q Q  QQ++
Sbjct: 431 TQHVINAQQPQQQQQQQQQQQQQQQQQ 457


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/19 (31%), Positives = 9/19 (47%)
 Frame = -2

Query: 360 HAFSCWVSCSCHCCIDLLL 304
           H    W++C   CC   +L
Sbjct: 107 HLCKLWLTCDVLCCTASIL 125


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/19 (31%), Positives = 9/19 (47%)
 Frame = -2

Query: 360 HAFSCWVSCSCHCCIDLLL 304
           H    W++C   CC   +L
Sbjct: 107 HLCKLWLTCDVLCCTASIL 125


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/19 (31%), Positives = 9/19 (47%)
 Frame = -2

Query: 360 HAFSCWVSCSCHCCIDLLL 304
           H    W++C   CC   +L
Sbjct: 107 HLCKLWLTCDVLCCTASIL 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,930
Number of Sequences: 438
Number of extensions: 1801
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)