Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0619.Seq
         (490 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   4.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -3

Query: 422  WKLRHCDWTQS 390
            W   HCDW ++
Sbjct: 2271 WNKDHCDWPEN 2281


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 342 TFLAPDGSFTLVR 380
           T   PDG FT++R
Sbjct: 579 TVTVPDGGFTIIR 591


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 397 HNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRID 284
           H+P A  +   LP+GA   L  ++ G+V  +A G  ++
Sbjct: 35  HSPCATGSN-GLPAGAGSNLLCASNGLVTTLASGSSLN 71


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 164  DGYHHREDALQGSWQHHVHMASS 232
            D Y HR ++LQ   +++V   SS
Sbjct: 1532 DNYDHRRNSLQMQQRNNVTWKSS 1554


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 164  DGYHHREDALQGSWQHHVHMASS 232
            D Y HR ++LQ   +++V   SS
Sbjct: 1532 DNYDHRRNSLQMQQRNNVTWKSS 1554


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 164  DGYHHREDALQGSWQHHVHMASS 232
            D Y HR ++LQ   +++V   SS
Sbjct: 1532 DNYDHRRNSLQMQQRNNVTWKSS 1554


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 164  DGYHHREDALQGSWQHHVHMASS 232
            D Y HR ++LQ   +++V   SS
Sbjct: 1532 DNYDHRRNSLQMQQRNNVTWKSS 1554


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,190
Number of Sequences: 336
Number of extensions: 2696
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)