Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0619.Seq
(490 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 128 3e-31
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 128 3e-31
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 128 3e-31
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 42 5e-05
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.16
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 28 0.66
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 26 2.7
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 26 2.7
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 25 8.1
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 8.1
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 128 bits (310), Expect = 3e-31
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = -1
Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
PEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VG
Sbjct: 107 PEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVG 166
Query: 310 IVAGGGRIDKPILKAGRAYTSTR 242
IVAGGGRIDKP+LKAGRA+ R
Sbjct: 167 IVAGGGRIDKPLLKAGRAFHKYR 189
Score = 100 bits (240), Expect = 1e-22
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3
Query: 263 KGIHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 93
+ HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 183 RAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 128 bits (310), Expect = 3e-31
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = -1
Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
PEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VG
Sbjct: 107 PEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVG 166
Query: 310 IVAGGGRIDKPILKAGRAYTSTR 242
IVAGGGRIDKP+LKAGRA+ R
Sbjct: 167 IVAGGGRIDKPLLKAGRAFHKYR 189
Score = 100 bits (240), Expect = 1e-22
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3
Query: 263 KGIHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 93
+ HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 183 RAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 128 bits (310), Expect = 3e-31
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = -1
Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
PEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VG
Sbjct: 107 PEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVG 166
Query: 310 IVAGGGRIDKPILKAGRAYTSTR 242
IVAGGGRIDKP+LKAGRA+ R
Sbjct: 167 IVAGGGRIDKPLLKAGRAFHKYR 189
Score = 100 bits (240), Expect = 1e-22
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -3
Query: 263 KGIHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 93
+ HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 183 RAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.9 bits (94), Expect = 5e-05
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -3
Query: 266 WKGIHKYKVKRNCW----PYVRGVAMNPVEHPHGGGNHQHIG 153
W+ K R+ W P VRG AMNP +HPHGGG + IG
Sbjct: 238 WQHRQLGKAGRSRWLGIRPTVRGTAMNPCDHPHGGGGGKSIG 279
Score = 33.5 bits (73), Expect = 0.017
Identities = 20/78 (25%), Positives = 41/78 (52%)
Frame = -1
Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
P GT++ + + +L R++G+ A +I D K V+L SG ++ + ++ +G
Sbjct: 174 PIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEERKILDTSFATIG 231
Query: 310 IVAGGGRIDKPILKAGRA 257
+V+ + + KAGR+
Sbjct: 232 VVSNIYWQHRQLGKAGRS 249
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.16
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 300 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 470
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 28.3 bits (60), Expect = 0.66
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +3
Query: 126 CSSLDSGSLTYMLMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVYALPAFKIGLSIRP 296
C+S SG LT + ++ TT ++L +GN Y++ V + L + + A +G+S+ P
Sbjct: 295 CAS-QSGQLTLLRLICTT-KIL---NGNPIYVYSFVPHKIRLTHLVDAPLLGMSVCP 346
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 192 YRVHGNTT-YIWPAVTFDLVLVYALPAFKI 278
Y HG+ +IW + ++++ ALP+FK+
Sbjct: 70 YTTHGSIVEFIWTLIPALILILVALPSFKL 99
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 170 YHHREDALQGSWQHHVHMASSYV*PCTCVCPSSFQNRFVNTSTSSNNTDHAS 325
YH + G W ++ + SS + C C + + + T SS N DH++
Sbjct: 180 YHATSNEFPGLWCNNECIPSS-IPNCACGAKRQLEFQILPTLISSMNIDHSA 230
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 24.6 bits (51), Expect = 8.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 348 LAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPI 455
+AP + T+ ++A+GLC + RA PL PI
Sbjct: 116 IAPLSANTMAKMANGLCDNLLTSL--IRAWAPLKPI 149
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 302 WRWTY*QTYFESWKGIHKYKVKR 234
WR TY Q + ++ IH+Y+ R
Sbjct: 478 WRSTYEQCFKNYYETIHRYETNR 500
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,553
Number of Sequences: 5004
Number of extensions: 43108
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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