Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0619.Seq
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 118 3e-27
07_01_1201 - 11419851-11419913,11420090-11420311 32 0.22
07_03_1786 - 29507906-29508898 29 1.5
06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330 29 1.5
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 1.5
10_08_0063 + 14588177-14589343 29 2.0
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 2.6
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 2.6
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 28 3.5
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 28 3.5
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 4.6
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 27 8.1
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 118 bits (283), Expect = 3e-27
Identities = 53/83 (63%), Positives = 65/83 (78%)
Frame = -1
Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
PEG +VCN+E +GDRG ARASG++A VI HNPD +R+KLPSGAKK++PSS R M+G
Sbjct: 108 PEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIG 167
Query: 310 IVAGGGRIDKPILKAGRAYTSTR 242
VAGGGR +KP+LKAG AY R
Sbjct: 168 QVAGGGRTEKPMLKAGNAYHKYR 190
Score = 105 bits (253), Expect = 1e-23
Identities = 45/54 (83%), Positives = 48/54 (88%)
Frame = -3
Query: 254 HKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 93
HKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KVGLIAA
Sbjct: 187 HKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 32.3 bits (70), Expect = 0.22
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3
Query: 285 SIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 464
++ PPP +P +P R+ P G +G P A R+P +P+F S
Sbjct: 12 ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70
Query: 465 RL 470
R+
Sbjct: 71 RV 72
>07_03_1786 - 29507906-29508898
Length = 330
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 165 MVTTTVRMLYRVHGNTTYIWPAVTFDLVLVYALPA 269
+V VR LY HGNT W F +VY+ A
Sbjct: 44 VVREEVRRLYEEHGNTAVSWLRALFHDCMVYSCDA 78
>06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330
Length = 426
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 170 YHHREDALQGSWQHHVHMA----SSYV*PCTCVCPSSFQNRFVNTSTSSNNTDHA 322
+HH++D +Q S H++ S+ + C+ VC S+ + N S N D++
Sbjct: 354 HHHQQDHMQVSSLVHINGGGGGGSNNILSCSSVCSSALPSTATNGEVSDQNNDNS 408
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -3
Query: 425 LWKLRHCDWT 396
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>10_08_0063 + 14588177-14589343
Length = 388
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = -1
Query: 430 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYT 251
RA+ A V+ P A LPS +L S V + GGG ++ A R
Sbjct: 170 RAAPAPAVVVDVPPAAAAAAPDLPSQMGALLLSMEGADVTLQVGGGEVETTTFAAHRCVL 229
Query: 250 STRSNVTAGHMY 215
+ RS+V ++
Sbjct: 230 AARSSVFRSELF 241
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 2.6
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +1
Query: 394 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 483
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 212 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 105
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 242 PCTCVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHS 409
P CPS ++ +++T + +H S +QN L R + SC IR+++ S
Sbjct: 1095 PSVAPCPSDIVLKWFDSTTMEDLVNHLSSNGYQNDLLHRAKVASCLCIIRLLTKLS 1150
>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = +3
Query: 198 VHGNTTYIWPAVTFDLVLVYALPAFKIGLSIRPPPATIPTMPLLLDGRTFLAPDGSFTLV 377
+H NTT P + + + +L F G+S R T+P +P L D P F L+
Sbjct: 1252 LHENTT---PDTNYLVPSLKSLKIFSSGISGRWLTRTLPHLPSLEDFELRKCPQIKFLLI 1308
Query: 378 RLASGLCPITVAKFPEARAR 437
++G ++A AR
Sbjct: 1309 SQSTGEATSSLASAETTSAR 1328
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 394 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 275
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -1
Query: 463 EEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRID 284
E RGR ARAS G N +KR R+ +P+ + + +N I +G R+
Sbjct: 488 EHLYNQRGREARASDAIVINGGDNNLSKRKRLTVPARSNSL--KNNMASNSIKSGSQRMW 545
Query: 283 KPI 275
PI
Sbjct: 546 VPI 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,627,764
Number of Sequences: 37544
Number of extensions: 324119
Number of successful extensions: 1144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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