Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0619.Seq
(490 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 5e-33
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 96 2e-20
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 40 8e-04
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.29
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 31 0.51
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0) 28 3.6
SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05) 27 8.3
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088) 27 8.3
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05) 27 8.3
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.3
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 27 8.3
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05) 27 8.3
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 137 bits (331), Expect = 5e-33
Identities = 63/79 (79%), Positives = 71/79 (89%)
Frame = -1
Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
PEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +VG
Sbjct: 108 PEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVG 167
Query: 310 IVAGGGRIDKPILKAGRAY 254
IVAGGGRIDKP+LKAGRAY
Sbjct: 168 IVAGGGRIDKPMLKAGRAY 186
Score = 109 bits (262), Expect = 1e-24
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = -3
Query: 263 KGIHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 93
+ HKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG STV+R T AGRKVGLIAA
Sbjct: 184 RAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDTPAGRKVGLIAA 240
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 95.9 bits (228), Expect = 2e-20
Identities = 43/58 (74%), Positives = 50/58 (86%)
Frame = -1
Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGM 317
PEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +
Sbjct: 66 PEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRAL 123
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 40.3 bits (90), Expect = 8e-04
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = -1
Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
P GT+V N+E G +LARA+G A +I + V+LPS +K + S VG
Sbjct: 124 PIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVEKEVSSKCLASVG 181
Query: 310 IVAGGGRIDKPILKAGR 260
V+ R ++ I KAGR
Sbjct: 182 RVSNIERKNRVIGKAGR 198
>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 55 VSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 180
V VL P + P+LR +RP LRP P+L L W PP
Sbjct: 410 VGVLHPMLRPMLRPMLRPMLRPMLRPMLR-PMLQYKLWCQPP 450
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 297 PPATIPTMPLLLDGRTFLAPDGSFT 371
P AT + L+LD TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 436 LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 308
+AR +G+F T + D RTR P KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513
>SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 123 RCSSLDSGSLTYMLMVTTTVRMLY-RVHGNTTYIWPAVTFDLVLVYALPA 269
R S+L SG ++Y + TT + L+ + H N+ +I +V++Y LPA
Sbjct: 89 RSSALKSG-ISYNRVSTTYLNQLHEQPHANSNFISQLSVLAIVMLYYLPA 137
>SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0)
Length = 652
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 204 GNTT--YIWPAVTFDLVLVYALPAFKIGLSI 290
GNTT Y W AV + +++ + LPA GLS+
Sbjct: 544 GNTTARYRWFAVAYLILMFFLLPAAVFGLSL 574
>SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 61 VLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 180
+L P + P+LR +RP LRP P+L + W PP
Sbjct: 1 MLRPMLRPMLRPMLRPMLRPMLRPMLQYKL-----WCQPP 35
>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2337
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 311 YCCWRWTY*QTYFESW-KGIHKYKVKRNCWP 222
Y W W FE + K KYK + +CWP
Sbjct: 626 YEVWHWERWARLFEEYIKTFLKYKQEASCWP 656
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 294 PPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPE 425
PPP IP + + + GR+F+ + +V SG P+T+ K E
Sbjct: 361 PPPIDIPNLMIPIRGRSFV----NDKIVEEKSGDSPLTIKKTSE 400
>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 61 VLPPRILPVLRAAIRPTLRPADVPLLTVEALPI 159
++ P LP+ I PT P + P++ ALPI
Sbjct: 147 IIYPTALPITSPIIYPTALPINPPIIYPTALPI 179
>SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 368 YSCTLSIRIVSNHSGEVSRG 427
Y+CTL+I + H GE+ RG
Sbjct: 11 YACTLNINVGVKHPGEMFRG 30
>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
Length = 275
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 263 SSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 358
+++ N VNTST+S +DH +V NL SR
Sbjct: 198 TTYPNVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
Length = 321
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 263 SSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 358
+++ N VNTST+S +DH +V NL SR
Sbjct: 150 TTYPNVIVNTSTASGLSDHLAVIFEVNLKPSR 181
>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
Length = 249
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 263 SSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 358
+++ N VNTST+S +DH +V NL SR
Sbjct: 198 TTYPNVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 801
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 263 SSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 358
+++ N VNTST+S +DH +V NL SR
Sbjct: 92 TTYPNVIVNTSTASGLSDHLAVIFEVNLKPSR 123
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +3
Query: 273 KIGLS-IRPPPATI--PTMPLLLDGRTFLAPDGSFT 371
++GLS I+PPP + PT+P + G P GS T
Sbjct: 237 RLGLSNIKPPPPPVPPPTIPSVPPGSETYVPPGSAT 272
>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
Length = 273
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 263 SSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 358
+++ N VNTST+S +DH +V NL SR
Sbjct: 198 TTYPNVIVNTSTASGLSDHLAVIFEVNLKPSR 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,358,158
Number of Sequences: 59808
Number of extensions: 354477
Number of successful extensions: 957
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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