Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0619.Seq
         (490 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...   151   9e-39
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    25   1.8  
AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.         24   3.2  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   5.6  

>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score =  151 bits (367), Expect = 9e-39
 Identities = 70/79 (88%), Positives = 74/79 (93%)
 Frame = -1

Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
           PEGTIVCNLEEK GDRG+LAR SGN+A+VI HNPD KRTRVKLPSGAKKVLPS+NR MVG
Sbjct: 108 PEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVG 167

Query: 310 IVAGGGRIDKPILKAGRAY 254
           IVAGGGRIDKPILKAGRAY
Sbjct: 168 IVAGGGRIDKPILKAGRAY 186



 Score =  117 bits (282), Expect = 2e-28
 Identities = 51/57 (89%), Positives = 52/57 (91%)
 Frame = -3

Query: 263 KGIHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 93
           +  HKYKVKRNCWP VRGVAMNPVEHPHGGGNHQHIGKASTVKRGT  GRKVGLIAA
Sbjct: 184 RAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAA 240


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 332 KQQRHGRYCCWRWTY 288
           +QQ+HG++CC R ++
Sbjct: 280 QQQQHGQHCCCRGSH 294


>AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 334 SSNRGMVGIVAGGGRIDKPILKAGRAY 254
           S+ +  +G V GG   D  IL  GRAY
Sbjct: 81  SAGQVPLGAVVGGHTSDGEILYVGRAY 107


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 282 LSIRPPPATIPTM 320
           + +RPPP  +PTM
Sbjct: 114 MGMRPPPMMVPTM 126


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,068
Number of Sequences: 2352
Number of extensions: 11789
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43131618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)