Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0619.Seq
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   132   1e-31
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical ...    27   5.5  
U88184-8|AAK31515.1|  301|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z81592-8|CAB04730.1|  365|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF016430-10|AAB65374.1|  467|Caenorhabditis elegans Hypothetical...    27   9.7  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  132 bits (320), Expect = 1e-31
 Identities = 57/79 (72%), Positives = 69/79 (87%)
 Frame = -1

Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
           PEGT +CN+E K GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G
Sbjct: 108 PEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIG 167

Query: 310 IVAGGGRIDKPILKAGRAY 254
           +VAGGGR DKP+LKAGR+Y
Sbjct: 168 LVAGGGRTDKPLLKAGRSY 186



 Score =  104 bits (249), Expect = 4e-23
 Identities = 45/57 (78%), Positives = 48/57 (84%)
 Frame = -3

Query: 263 KGIHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 93
           +  HKYK KRN WP VRGVAMNPVEHPHGGGNHQHIG  STV+R  SAG+KVGLIAA
Sbjct: 184 RSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAA 240


>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
           protein C49C3.4 protein.
          Length = 1566

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
 Frame = +3

Query: 66  ASTNPSGPASSNKTNFATSRCSSLDSGSLTYML---MVTTTVRMLYRVHGNT-TYIWP-A 230
           AS+  +G ASS  T  ATS  ++  S S T +    M ++T + +     N+ T+++  A
Sbjct: 549 ASSTTTGEASSTTTGEATSVAATTSSASSTVVTSTEMPSSTSQAVCTTQDNSATFLFAYA 608

Query: 231 VTFDLVLVYALPAFKIGLSIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITV 410
             FD    Y L +  IG  +    A +PT   L +  T L  +       +A+      V
Sbjct: 609 ADFD-PTTYGLVSRTIGSYV---TANLPTGQTLANVLTDLTTEMDIKYTNVANDFTTNCV 664

Query: 411 AKFPEARARR 440
              P+A   R
Sbjct: 665 TDQPDATLAR 674


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -1

Query: 403 IGHNPDAKRTRVKLPSGAKKVL 338
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.1 protein.
          Length = 912

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 241 TLYLCMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTV 363
           T+Y+ +P  L   +  +  L Q+ R  +  L A+P WL  V
Sbjct: 474 TIYIILPIYLISILENHSKLTQRIREHVKALSAQPDWLNKV 514


>U88184-8|AAK31515.1|  301|Caenorhabditis elegans Hypothetical
           protein F36H5.4 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 266 WKGIHKYKVKRNCWPYVRGVAMNPVEHP 183
           WKG+ ++  K   W YV  V   P   P
Sbjct: 271 WKGVCRWNEKSGEWDYVETVQQKPASLP 298


>Z81592-8|CAB04730.1|  365|Caenorhabditis elegans Hypothetical
           protein T16G1.8 protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 258 ALPAFKIGLSIRPPPATIPTMP 323
           ALP++    S+ PPP  +P+ P
Sbjct: 95  ALPSYSTAYSMAPPPLILPSSP 116


>AF016430-10|AAB65374.1|  467|Caenorhabditis elegans Hypothetical
           protein C05C8.7 protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
 Frame = +3

Query: 75  NPSGPASSNKT-NFATSRCSSLDSGSLTYMLMVTTTVRMLYRVHGNTTYIWPAVTFDLVL 251
           NPS   ++N   N        + S   T  L V  T     R+H      +P       L
Sbjct: 70  NPSPLTNNNSAKNIHLPFIMKVMSIRTTLSLQVHPTKEQARRLHEKDPIHYPDRNHKPEL 129

Query: 252 VYALPAFKIGLSIRPPP------ATIPTMPLLLDGRTFLAP 356
            YAL  F++    RP         T P+  LL  G T+  P
Sbjct: 130 AYALTRFELLCGFRPAREILQNLQTFPSFRLLFGGDTYAKP 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,826,562
Number of Sequences: 27780
Number of extensions: 251350
Number of successful extensions: 712
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)