Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0619.Seq
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.43 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   3.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 250 LCMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSW 351
           LC+PF     VC+Y H    Y   L C +   SW
Sbjct: 148 LCVPFTTYTPVCEYDHTWWPY-DILNCTIHIASW 180


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 78  PSGPASSNKTNFATSRCSS 134
           P  PASS+ ++  TS CSS
Sbjct: 589 PDKPASSSASSAPTSVCSS 607


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 403 IGHNPDAKRTRVKLPSGAKKVL 338
           IG+  + K+TR  LP+G +KVL
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVL 77


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 144 GSLTYMLMVTTTVRMLYRVH 203
           GS+TY +  TTT+  +  +H
Sbjct: 147 GSVTYGMRFTTTLACMMDLH 166


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 141 SGSLTYMLMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVYALPAFKIGLSIRPP 299
           +G  T +++VT     L      TT    +VT   V   A     +GL++ PP
Sbjct: 41  AGLFTMLIIVTIVGNTLVIAAVITTRRLRSVTNCFVSSLAAADLLVGLAVMPP 93


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -2

Query: 246 QGQT*LLAICTWCC 205
           +G+  +++ C WCC
Sbjct: 3   KGRHVVMSCCCWCC 16


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 26  LNNKFRSPSLYRS 64
           LN+KF S +LYR+
Sbjct: 89  LNHKFSSVTLYRN 101


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +3

Query: 291 RPPPATIPTMPLLLDGRTFLA 353
           +P P     +P++++GR  +A
Sbjct: 218 KPTPVQKHALPIIMNGRDLMA 238


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 384 ASGLCPITVAKFPEARA 434
           AS  C +   K+P+ARA
Sbjct: 624 ASSYCGLRDRKYPDARA 640


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,507
Number of Sequences: 438
Number of extensions: 3197
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)