Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0619.Seq
(490 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 120 7e-28
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 119 1e-27
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 115 2e-26
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 46 2e-05
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 44 4e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 44 4e-05
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 28 2.9
At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta ... 28 3.9
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 27 6.8
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac... 27 6.8
At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family... 27 9.0
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ... 27 9.0
At3g03860.1 68416.m00398 expressed protein 27 9.0
At2g22730.1 68415.m02694 transporter-related low similarity to s... 27 9.0
At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identi... 27 9.0
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 120 bits (288), Expect = 7e-28
Identities = 53/83 (63%), Positives = 66/83 (79%)
Frame = -1
Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
PEG +VCN+E +GDRG LARASG++A VI HNPD+ TR+KLPSG+KK++PS R M+G
Sbjct: 108 PEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIG 167
Query: 310 IVAGGGRIDKPILKAGRAYTSTR 242
VAGGGR +KP+LKAG AY R
Sbjct: 168 QVAGGGRTEKPMLKAGNAYHKYR 190
Score = 101 bits (243), Expect = 2e-22
Identities = 44/54 (81%), Positives = 47/54 (87%)
Frame = -3
Query: 254 HKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 93
HKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KVGLIAA
Sbjct: 187 HKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 119 bits (286), Expect = 1e-27
Identities = 52/79 (65%), Positives = 65/79 (82%)
Frame = -1
Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
PEG ++CN+E +GDRG LARASG++A VI HNP++ TRVKLPSG+KK+LPS+ R M+G
Sbjct: 109 PEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIG 168
Query: 310 IVAGGGRIDKPILKAGRAY 254
VAGGGR +KP LKAG AY
Sbjct: 169 QVAGGGRTEKPFLKAGNAY 187
Score = 107 bits (256), Expect = 5e-24
Identities = 46/62 (74%), Positives = 50/62 (80%)
Frame = -3
Query: 278 YFESWKGIHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 99
+ ++ HKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R SAG KVG I
Sbjct: 180 FLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQI 239
Query: 98 AA 93
AA
Sbjct: 240 AA 241
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 115 bits (276), Expect = 2e-26
Identities = 50/83 (60%), Positives = 64/83 (77%)
Frame = -1
Query: 490 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 311
PEG ++CN+E +GDRG ARASG++A VI HNPD +R+KLPSG+KK++PS R M+G
Sbjct: 108 PEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIG 167
Query: 310 IVAGGGRIDKPILKAGRAYTSTR 242
VAGGGR +KP+LKAG AY R
Sbjct: 168 QVAGGGRTEKPMLKAGNAYHKYR 190
Score = 106 bits (254), Expect = 9e-24
Identities = 45/54 (83%), Positives = 48/54 (88%)
Frame = -3
Query: 254 HKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 93
HKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KVGLIAA
Sbjct: 187 HKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLIAA 240
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -3
Query: 251 KYKVKRNCWPYVRGVAM-NPVEHPHGG 174
K +KRN W VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.4 bits (100), Expect = 4e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = -1
Query: 484 GTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 305
GTI+ N+E G ++ RA+G A ++ P + +KLPSG K + + R +G V
Sbjct: 71 GTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKWINAKCRATIGTV 129
Query: 304 AGGGRIDKPILKAGRA 257
+ K + KAG++
Sbjct: 130 SNPSHGTKKLYKAGQS 145
Score = 40.7 bits (91), Expect = 5e-04
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = -3
Query: 248 YKVKRNCW----PYVRGVAMNPVEHPHGGG 171
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.4 bits (100), Expect = 4e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = -1
Query: 484 GTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 305
GTI+ N+E G ++ RA+G A ++ P + +KLPSG K + + R +G V
Sbjct: 71 GTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKWINAKCRATIGTV 129
Query: 304 AGGGRIDKPILKAGRA 257
+ K + KAG++
Sbjct: 130 SNPSHGTKKLYKAGQS 145
Score = 40.7 bits (91), Expect = 5e-04
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = -3
Query: 248 YKVKRNCW----PYVRGVAMNPVEHPHGGG 171
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 251 KYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 114
K VKR W + + HG GN I + S +KRG + R
Sbjct: 9 KSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54
>At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta
subunit (GGT-IB) nearly identical to GI:11878247
Length = 375
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = -3
Query: 272 ESWKGIHKYKVKR---NCWPYVRGVAMNPVEHPHGGGNH 165
+SW G+ K K NC Y G + P HGG +
Sbjct: 199 DSWSGMDKESAKNYILNCQSYDGGFGLIPGSESHGGATY 237
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 385 HQDCVQSQWRSFQRHVPDDLYHPFSLQDCTQW 480
H+ Q WRS + HV D+L P ++C W
Sbjct: 667 HKFFKQVMWRSSKVHVADELQLP-PQEECVSW 697
>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
8 / ERF transcription factor 8 (ERF8) identical to ERF
transcription factor 8 GI:10567108 from [Arabidopsis
thaliana]
Length = 185
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 439 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPI 275
R +A NF ++G +P T V P+ A+ + P +G GGG + I
Sbjct: 78 RGVKAKTNFGVIVGSSPTQSSTVVDSPTAARFITPPHLELSLG---GGGACRRKI 129
>At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 418
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 251 KYKVKRNCWPYVRGVAMNPVEHPHGGGNHQ 162
KY+ ++ W Y G + P+ GGNH+
Sbjct: 57 KYREMKSFWKYYSGQEVAPIPTIFIGGNHE 86
>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
(S1) identical to S-locus related protein SLR1 homolog
(AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
profiles PF01453: Lectin (probable mannose binding),
PF00954: S-locus glycoprotein family
Length = 439
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 248 TCVCPSS-FQNRFVNTSTSSNNTDHASVA*WQNLLGSR 358
T V P + F+ F T+TSS N DH + W + R
Sbjct: 48 TIVSPGNIFELGFFKTTTSSRNGDHWYLGIWYKSISER 85
>At3g03860.1 68416.m00398 expressed protein
Length = 300
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +3
Query: 255 YALPAFKIGLSIRPPPATIPTMPLLLDG----RTFLAPDG-SFTLVRLASGLCPITVAKF 419
Y F+ L + PP+ PT P+ +DG R + G ++ V + CP + A
Sbjct: 34 YEFELFRFDLEAKCPPSLYPTPPIEVDGDSLDRLMASQHGNAYMSVLFYASWCPFSRAVR 93
Query: 420 PE 425
P+
Sbjct: 94 PK 95
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 26.6 bits (56), Expect = 9.0
Identities = 29/94 (30%), Positives = 36/94 (38%)
Frame = +3
Query: 207 NTTYIWPAVTFDLVLVYALPAFKIGLSIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLA 386
N I+ AVT +V L G + ATIP LL G TFL FT L
Sbjct: 332 NADMIFGAVTIICGIVGTLSG---GFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLK 388
Query: 387 SGLCPITVAKFPEARARRPLSPIFSSRLHTMVPS 488
S I + E +P+ LH + PS
Sbjct: 389 SLYGFIALFALGELLVFATQAPVNYVCLHCVKPS 422
>At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identical
to 14-3-3 protein GF14iota GI:12963453 from [Arabidopsis
thaliana]
Length = 268
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 417 TSPL*LDTILMLSVQE*SYRLEPRRFCHQATEAWSVLLLEVDVLT 283
T P+ L L SV P R CH A +A+ + E+D L+
Sbjct: 172 THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLS 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,621
Number of Sequences: 28952
Number of extensions: 241078
Number of successful extensions: 718
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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