Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0618.Seq
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379...    29   2.0  
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436...    27   6.0  

>10_08_0568 +
           18837195-18837203,18837694-18837741,18837853-18837912,
           18837986-18838155,18838297-18838369,18838529-18838594,
           18838685-18838768,18838950-18839027,18839122-18839205,
           18839562-18839641,18839791-18839848,18839933-18840235,
           18840361-18840531,18840972-18841204,18841303-18841705,
           18841961-18842212,18842293-18842790,18843073-18843170,
           18843314-18843413,18843653-18843798,18843912-18844068
          Length = 1056

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 246 VGDSYTPPSA-SVCSPRVPRTCRW 314
           +GD YTPP+A ++CS  +P  C+W
Sbjct: 756 LGDQYTPPAAIALCS--MPPLCKW 777


>02_05_1033 +
           33642479-33642688,33643089-33643343,33643479-33643603,
           33643827-33643908,33644008-33644076,33644102-33644341,
           33644431-33644496,33645087-33645155,33645229-33645366,
           33645681-33645754,33646146-33646255,33646428-33646525,
           33646595-33646633,33646771-33646890,33646984-33647109,
           33647321-33647382,33647467-33647518,33648182-33648436
          Length = 729

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 198 VHLLDGVVLGEPHAALVGDSYTPPSASVCSPRVP 299
           VH  +  V+GEP + LV     PP A  C  R P
Sbjct: 695 VHTAEASVIGEPTSLLVSPCVVPP-AGECYNRYP 727


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,576,618
Number of Sequences: 37544
Number of extensions: 159719
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)