Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0618.Seq
(483 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 57 9e-09
SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 51 6e-07
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 6e-07
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 9e-06
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_8314| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 39 0.002
SB_8138| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0) 39 0.002
SB_26353| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.9e-18) 37 0.010
SB_54113| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0.11) 34 0.071
>SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 725
Score = 56.8 bits (131), Expect = 9e-09
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Frame = -3
Query: 430 GFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEG---GV 260
G+LT CP NLGT +RASVH+ +++ K+H+Q RG GEH+E+ G GV
Sbjct: 254 GYLTSCPTNLGTGMRASVHV-KIPHAKDHPEFDKICEKFHIQARGIHGEHSESTGEDAGV 312
Query: 259 YE 254
Y+
Sbjct: 313 YD 314
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = -3
Query: 430 GFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEG 266
G+L+ CP NLGT +RASVH+ +++ ++H+Q RG GEH+ + G
Sbjct: 633 GYLSGCPTNLGTGMRASVHV-KIPKASEHPDFQKICDEFHIQARGIHGEHSVSTG 686
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/31 (54%), Positives = 27/31 (87%)
Frame = -2
Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 162
ISNKRR+GL+E V++MY+G+ +L++IEK+
Sbjct: 694 ISNKRRLGLSEVQCVQDMYNGVKKLLEIEKA 724
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/31 (51%), Positives = 26/31 (83%)
Frame = -2
Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 162
ISNKRR+GL+E V++MY+G+ L++IE++
Sbjct: 315 ISNKRRLGLSEVQCVQDMYNGVKSLLEIERA 345
>SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 969
Score = 50.8 bits (116), Expect = 6e-07
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = -3
Query: 430 GFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEH---TEAEGGV 260
G+L+ CP NLGT +RASVH+ +++ ++H+Q RG GEH T A+ GV
Sbjct: 94 GYLSSCPTNLGTGMRASVHV-KIPHASAHPDFQKICDEFHIQARGIHGEHSVSTGADAGV 152
Query: 259 YE 254
++
Sbjct: 153 FD 154
Score = 50.8 bits (116), Expect = 6e-07
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = -3
Query: 430 GFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEH---TEAEGGV 260
G+L+ CP NLGT +RASVH+ +++ ++H+Q RG GEH T A+ GV
Sbjct: 526 GYLSSCPTNLGTGMRASVHV-KIPHASAHPDFQKICDEFHIQARGIHGEHSVSTGADAGV 584
Query: 259 YE 254
++
Sbjct: 585 FD 586
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = -3
Query: 430 GFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEG 266
G+L+ CP NLGT +RASVH+ +++ ++H+Q RG GEH+ + G
Sbjct: 878 GYLSGCPTNLGTGMRASVHV-KIPKASEHPDFQKICDEFHIQARGIHGEHSVSTG 931
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/31 (54%), Positives = 27/31 (87%)
Frame = -2
Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 162
ISNKRR+GL+E V++MY+G+ +L++IEK+
Sbjct: 155 ISNKRRLGLSEVQCVQDMYNGVKKLLEIEKA 185
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/31 (54%), Positives = 27/31 (87%)
Frame = -2
Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 162
ISNKRR+GL+E V++MY+G+ +L++IEK+
Sbjct: 939 ISNKRRLGLSEVQCVQDMYNGVKKLLEIEKA 969
Score = 41.9 bits (94), Expect = 3e-04
Identities = 16/31 (51%), Positives = 27/31 (87%)
Frame = -2
Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 162
ISNKRR+GL+E V++MY+G+ +L++IE++
Sbjct: 587 ISNKRRLGLSEVQCVQDMYNGVKKLLEIERA 617
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 50.8 bits (116), Expect = 6e-07
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = -3
Query: 433 LGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVYE 254
LG++ CP NLGT +RA VH+ L+ + +K LQ RGT G T + GGVY+
Sbjct: 2569 LGYVLTCPSNLGTGLRAGVHLKIPLLSQDEKRLDAILAKLKLQKRGTGGVDTASVGGVYD 2628
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -2
Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 159
ISN R+G +E + V+ M DG+ LI++EK L
Sbjct: 2629 ISNADRIGFSEVELVQGMVDGVGLLIEMEKRL 2660
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 46.8 bits (106), Expect = 9e-06
Identities = 26/70 (37%), Positives = 35/70 (50%)
Frame = -3
Query: 439 RRLGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGV 260
+ LG++ CP NLGT +RA VH+ L+ + K LQ RGT G T A GG
Sbjct: 307 QHLGYILTCPSNLGTGLRAGVHV-KLPNLGKDKRLDTILDKLRLQKRGTGGVDTAAVGGT 365
Query: 259 YESPTSAAWG 230
++ S G
Sbjct: 366 FDISNSDRLG 375
Score = 31.1 bits (67), Expect = 0.50
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -2
Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 159
ISN R+G +E + V+++ DG+ LI +EK L
Sbjct: 368 ISNSDRLGYSEVELVQKVIDGVNLLIDMEKRL 399
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -3
Query: 433 LGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVYE 254
LG++ CP NLGT +R VH+ + + K LQ RGT G T + G ++
Sbjct: 1014 LGYVLTCPSNLGTGLRGGVHV-KLPMVSKDARFDGILEKLRLQKRGTGGVDTASTDGTFD 1072
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -3
Query: 439 RRLGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGV 260
+ LG++ CP NLGT +R VH+ + + LQ RGT G T + G
Sbjct: 246 KHLGYVLTCPSNLGTGLRGGVHV-KLPLLSKEPRFDSILRTLRLQKRGTGGVDTASTDGT 304
Query: 259 YE 254
++
Sbjct: 305 FD 306
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 433 LGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVYE 254
LG++ CP NLGT +R VH+ + + LQ RGT G T + G ++
Sbjct: 617 LGYVLTCPSNLGTGLRGGVHV-KLPLLSARDDFDSLLKALRLQKRGTGGVDTASTDGTFD 675
Score = 34.3 bits (75), Expect = 0.053
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = -2
Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 159
ISN R+G +E + V+++ DG+ LI+IEK+L
Sbjct: 307 ISNLDRLGTSEVEQVQKVIDGVKALIEIEKAL 338
Score = 31.1 bits (67), Expect = 0.50
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = -2
Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 159
ISN R+G +E + V+ + DG+ ++++EK+L
Sbjct: 676 ISNADRLGTSEVEQVQTVVDGVKLMVELEKAL 707
Score = 31.1 bits (67), Expect = 0.50
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL*APPRAD 138
ISN R+G +E V+++ DG+ L+++EK L A D
Sbjct: 1073 ISNLDRIGFSEVQLVQKVIDGVKILVEMEKKLMAGQSID 1111
>SB_8314| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 309
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -3
Query: 430 GFLTFCPXNLGTTVRASVHI--XXXXXXXXXXXLEEVASKYHLQVRGTRGEHTE 275
G +T CP N+GT +R SVHI ++++ + + Q RG+ GEH+E
Sbjct: 211 GSVTCCPTNIGTGMRGSVHILVPKLIAKIGFDAIDKICRERNCQARGSTGEHSE 264
>SB_8138| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
Length = 383
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -3
Query: 430 GFLTFCPXNLGTTVRASVHI--XXXXXXXXXXXLEEVASKYHLQVRGTRGEHTE 275
G +T CP N+GT +R SVHI ++++ + + Q RG+ GEH+E
Sbjct: 285 GSVTCCPTNIGTGMRGSVHILVPKLIAKIGFDAIDKICRERNCQARGSTGEHSE 338
>SB_26353| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=1.9e-18)
Length = 138
Score = 36.7 bits (81), Expect = 0.010
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3
Query: 439 RRLGFLTFCPXNLGTTVRASVHI 371
R LG++ CP NLGT +RASVH+
Sbjct: 109 RHLGYINTCPSNLGTGLRASVHV 131
>SB_54113| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0.11)
Length = 115
Score = 33.9 bits (74), Expect = 0.071
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = -2
Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 159
ISN R+G TE V+++ DG+ LIK+EK L
Sbjct: 70 ISNADRLGYTEVQLVQKVIDGVNLLIKMEKRL 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,789,223
Number of Sequences: 59808
Number of extensions: 150538
Number of successful extensions: 378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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