Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0618.Seq
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83109-2|CAB05517.1|  372|Caenorhabditis elegans Hypothetical pr...    71   3e-13
AF043703-6|AAK21503.1|  399|Caenorhabditis elegans Hypothetical ...    71   3e-13
U41543-2|AAO21426.1|  359|Caenorhabditis elegans Hypothetical pr...    71   6e-13
U41543-1|AAB37022.2|  396|Caenorhabditis elegans Hypothetical pr...    71   6e-13
AF003148-10|AAB54206.2|  427|Caenorhabditis elegans Hypothetical...    70   8e-13
Z75714-4|CAB00062.1|  360|Caenorhabditis elegans Hypothetical pr...    66   1e-11
U80451-10|AAB37844.1|  106|Caenorhabditis elegans Hypothetical p...    46   2e-05

>Z83109-2|CAB05517.1|  372|Caenorhabditis elegans Hypothetical
           protein F44G3.2 protein.
          Length = 372

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 35/69 (50%), Positives = 44/69 (63%)
 Frame = -3

Query: 436 RLGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVY 257
           RLG+LTFCP NLG+TVRASVHI            +++  K  LQ+RG  GEH+E+EGGVY
Sbjct: 280 RLGWLTFCPTNLGSTVRASVHI-ALPKLSAREDFKQICDKLDLQLRGIHGEHSESEGGVY 338

Query: 256 ESPTSAAWG 230
           +    A  G
Sbjct: 339 DISNRARLG 347



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/30 (60%), Positives = 27/30 (90%)
 Frame = -2

Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEK 165
           ISN+ R+GL+EY+AVK+MYDG+  LI++E+
Sbjct: 340 ISNRARLGLSEYEAVKKMYDGVKNLIEMEE 369


>AF043703-6|AAK21503.1|  399|Caenorhabditis elegans Hypothetical
           protein W10C8.5 protein.
          Length = 399

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 36/69 (52%), Positives = 44/69 (63%)
 Frame = -3

Query: 436 RLGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVY 257
           RLG+LTFCP NLG+TVRASVHI           + E+  K +LQVRG  GEH+E+ GGVY
Sbjct: 307 RLGWLTFCPTNLGSTVRASVHIALPKLAARKDFI-EICEKLNLQVRGIHGEHSESVGGVY 365

Query: 256 ESPTSAAWG 230
           +    A  G
Sbjct: 366 DISNKARLG 374



 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 19/30 (63%), Positives = 27/30 (90%)
 Frame = -2

Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEK 165
           ISNK R+GL+EY AVK+MYDG+ +LI++E+
Sbjct: 367 ISNKARLGLSEYQAVKQMYDGVKKLIEMEE 396


>U41543-2|AAO21426.1|  359|Caenorhabditis elegans Hypothetical
           protein F46H5.3b protein.
          Length = 359

 Score = 70.5 bits (165), Expect = 6e-13
 Identities = 35/69 (50%), Positives = 42/69 (60%)
 Frame = -3

Query: 436 RLGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVY 257
           RLG+LTFCP NLGTTVRASVHI            + +     LQ+RG  GEH+E+EGGVY
Sbjct: 268 RLGWLTFCPSNLGTTVRASVHI-RLPKISAKPDFKSICDGLKLQIRGIHGEHSESEGGVY 326

Query: 256 ESPTSAAWG 230
           +    A  G
Sbjct: 327 DISNKARLG 335



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = -2

Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 162
           ISNK R+GLTE++AVK+MYDGIA LI +EK+
Sbjct: 328 ISNKARLGLTEFEAVKQMYDGIAHLIALEKA 358


>U41543-1|AAB37022.2|  396|Caenorhabditis elegans Hypothetical
           protein F46H5.3a protein.
          Length = 396

 Score = 70.5 bits (165), Expect = 6e-13
 Identities = 35/69 (50%), Positives = 42/69 (60%)
 Frame = -3

Query: 436 RLGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVY 257
           RLG+LTFCP NLGTTVRASVHI            + +     LQ+RG  GEH+E+EGGVY
Sbjct: 305 RLGWLTFCPSNLGTTVRASVHI-RLPKISAKPDFKSICDGLKLQIRGIHGEHSESEGGVY 363

Query: 256 ESPTSAAWG 230
           +    A  G
Sbjct: 364 DISNKARLG 372



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = -2

Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 162
           ISNK R+GLTE++AVK+MYDGIA LI +EK+
Sbjct: 365 ISNKARLGLTEFEAVKQMYDGIAHLIALEKA 395


>AF003148-10|AAB54206.2|  427|Caenorhabditis elegans Hypothetical
           protein F32B5.1 protein.
          Length = 427

 Score = 70.1 bits (164), Expect = 8e-13
 Identities = 35/69 (50%), Positives = 44/69 (63%)
 Frame = -3

Query: 436 RLGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVY 257
           RLG+LTFCP NLG+TVRASVHI           + E+  K +LQVRG  GEH+++ GGVY
Sbjct: 335 RLGWLTFCPTNLGSTVRASVHIALPKLAARKDFI-EICEKLNLQVRGIHGEHSDSVGGVY 393

Query: 256 ESPTSAAWG 230
           +    A  G
Sbjct: 394 DISNKARLG 402



 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 19/30 (63%), Positives = 27/30 (90%)
 Frame = -2

Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEK 165
           ISNK R+GL+EY AVK+MYDG+ +LI++E+
Sbjct: 395 ISNKARLGLSEYQAVKQMYDGVKKLIEMEE 424


>Z75714-4|CAB00062.1|  360|Caenorhabditis elegans Hypothetical
           protein ZC434.8 protein.
          Length = 360

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 31/61 (50%), Positives = 41/61 (67%)
 Frame = -3

Query: 436 RLGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVY 257
           RLG+LTFCP NLGTTVRASVHI            +++ S   LQ+RG  GEH+E++ G+Y
Sbjct: 268 RLGWLTFCPTNLGTTVRASVHI-KLPKISAKDDFKKICSDMKLQIRGIHGEHSESKEGIY 326

Query: 256 E 254
           +
Sbjct: 327 D 327



 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 20/31 (64%), Positives = 29/31 (93%)
 Frame = -2

Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKS 162
           ISNK+R+GLTEY AV++MYDG+ +LI++EK+
Sbjct: 328 ISNKQRLGLTEYQAVRQMYDGLKKLIELEKA 358


>U80451-10|AAB37844.1|  106|Caenorhabditis elegans Hypothetical
           protein F11G11.13 protein.
          Length = 106

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/28 (64%), Positives = 26/28 (92%)
 Frame = -2

Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKI 171
           ISNK+R+GLTEY AV++MYDG+ +LI++
Sbjct: 71  ISNKQRLGLTEYQAVRQMYDGLKKLIEL 98



 Score = 32.3 bits (70), Expect = 0.19
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = -3

Query: 397 TTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVYE 254
           T++++SVHI            +++ S+  LQ+RG  GE+++ + G+Y+
Sbjct: 24  TSLKSSVHIKLPKISAKDDF-KKICSEMKLQIRGIHGEYSDLKEGIYD 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,915,619
Number of Sequences: 27780
Number of extensions: 110367
Number of successful extensions: 275
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)