Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0618.Seq
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    93   2e-21
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.1  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 92.7 bits (220), Expect = 2e-21
 Identities = 43/61 (70%), Positives = 48/61 (78%)
 Frame = -3

Query: 436 RLGFLTFCPXNLGTTVRASVHIXXXXXXXXXXXLEEVASKYHLQVRGTRGEHTEAEGGVY 257
           RLGFLTFCP NLGTTVRASVHI           LEE+A K++LQVRGTRGEHTEAEGG+Y
Sbjct: 263 RLGFLTFCPTNLGTTVRASVHIKLPKLAANRAKLEEIAGKFNLQVRGTRGEHTEAEGGIY 322

Query: 256 E 254
           +
Sbjct: 323 D 323



 Score = 59.3 bits (137), Expect = 2e-11
 Identities = 27/32 (84%), Positives = 30/32 (93%)
 Frame = -2

Query: 254 ISNKRRMGLTEYDAVKEMYDGIAELIKIEKSL 159
           ISNKRR+GLTEY AVKEM+DGIAELIK+EK L
Sbjct: 324 ISNKRRLGLTEYQAVKEMHDGIAELIKLEKEL 355


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 107 GH*SAGRPSSTTTLYCKT 54
           GH   GRPS TT     T
Sbjct: 216 GHAQMGRPSYTTATMATT 233


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 78  GGGAAR*LVPGLRGTINKYTV 140
           GGGAAR +V G    ++ + V
Sbjct: 75  GGGAARAVVAGRLSEVSNWKV 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,593
Number of Sequences: 438
Number of extensions: 1272
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)