Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0617.Seq
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.50
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 26 2.7
SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit L28... 26 2.7
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 26 3.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.5
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 25 4.6
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 25 4.6
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 25 4.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 6.1
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 6.1
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 25 8.1
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.7 bits (61), Expect = 0.50
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +2
Query: 32 NVQYIDQSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQIN 211
N++ ++ + + SR + TE +Y+T + K EI + + SE K++
Sbjct: 416 NIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLK--DEITSLKQTVSESEAERKRL- 472
Query: 212 FDDALETELADSDTIQKI 265
F A E +L +T+ K+
Sbjct: 473 FSSAQEKQLQMKETVNKL 490
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 26.2 bits (55), Expect = 2.7
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = +2
Query: 17 HLFKANVQYIDQSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIV 196
H FK + YI S+ S+S +Q + ++++ V S +KH +I N SE+ V
Sbjct: 70 HKFKQLLHYIFFSNRSSSVLGKQNVHN-SQTLGSV--SFCEKHAIDI---NYSEN----V 119
Query: 197 NKQINFDDALETE 235
NKQ+NF+ L+ +
Sbjct: 120 NKQLNFESHLDDQ 132
>SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit
L28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 118
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 53 SSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQ-RIVNK 202
+ AS +HQ P ++ESI+ V +++ KMNP E+ ++N+
Sbjct: 2 AKASKGKHQSG-PSNHSESIDLVRKALYGNKKVRSLKMNPDMWEKHEVINR 51
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 53 SSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKM-NPSESEQRIVNKQIN 211
S S+ +E TP + ES+N +++ + +E K PS+ ++ + +K+++
Sbjct: 544 SDNSDMYEKENTPIHHNESLNQLSKDLGSISLSEETKQEKPSKLKETVESKRLS 597
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 3.5
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = +3
Query: 48 IKAVHQTVDTKSKHHTN 98
++A+H+ +DTKSKH ++
Sbjct: 315 VEAIHKILDTKSKHSSS 331
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 4.6
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 14 NHLFKANVQYIDQSSASNSRHQEQTP---YKYTESINYVTESIPQKHYTEIYKMNPSESE 184
+HLF D SS+++ H+EQ P +Y + I Q+ Y N S
Sbjct: 18 SHLFIIIFIIRDMSSSNSRVHEEQPPTENRRYARPTAQMNRVIEQQPRRRDYFQNNDNSG 77
Query: 185 QRIVNKQINFDDA 223
+R N+ N +A
Sbjct: 78 RRGYNRHENNGNA 90
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 4.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 113 NYVTESIPQKHYTEIYKMNPSESEQRIVNKQINFDDALETEL 238
NYV+ P +Y E+YK+N E ++ N ++A +T L
Sbjct: 37 NYVSLK-PSSYYAELYKLNHLEG-AHVIMLGPNCEEAAKTAL 76
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 286 MPKPLNLREEQDFYGSFTNNVPKVVPSESYKVESFGDLPLMNY 414
+P PL+L QD+Y + + V P + Y F +PL+++
Sbjct: 242 LPSPLSLHFHQDYYHNL-HRVGAFEPFDPYYDTFFLPMPLISH 283
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 8 EANHLFKANVQYIDQSSASNSRHQEQTPYKYTESINYVTESIPQKHYTE 154
E HL K + + ++R + + TE+ + ESIP K TE
Sbjct: 703 ETKHLRKESTPSKQPTEGQHTRQESLPSQQTTETKHLRKESIPSKQPTE 751
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 6.1
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +2
Query: 47 DQSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQINFDDAL 226
D + ASNS K ++ + P K+ + ++PS S + VNKQ +
Sbjct: 212 DSNLASNSADSLLPSAKNRSFSSFTSFESPMKYDDSFFPISPSISPLQKVNKQQQIESPT 271
Query: 227 ET 232
T
Sbjct: 272 AT 273
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 24.6 bits (51), Expect = 8.1
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -3
Query: 193 YSLFTFRRIHFVYFCVMFLWY*FCNVVNAFGIFVWCLLLVSTV 65
Y ++ F IH Y F W FC V+ I +L V V
Sbjct: 169 YLIYLFLSIHLFYVFQSFPWTYFCLAVSGTCISELYVLFVHPV 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,464
Number of Sequences: 5004
Number of extensions: 39612
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -