Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0617.Seq
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1248 - 25165929-25166891,25169159-25169473                       29   1.5  
10_01_0228 + 2417187-2418061,2418127-2418319,2419011-2419025,241...    28   4.6  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     28   4.6  
09_06_0151 - 21237677-21237704,21237759-21237829,21238101-212382...    27   6.1  
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    27   8.1  
02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317...    27   8.1  
01_01_1228 - 9916850-9916919,9917462-9917533,9917629-9917700,991...    27   8.1  

>07_03_1248 - 25165929-25166891,25169159-25169473
          Length = 425

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 289 PKPLNLREEQDFYGSFTNNVPKVVPSESYKVESFGDLPLMNYNSKL 426
           P P  + E +D Y    +N     P+ +Y  + FG + L +Y   L
Sbjct: 151 PTPHQIEETEDDYNDDGSNANVASPNSNYDQDLFGSISLPHYQDML 196


>10_01_0228 +
           2417187-2418061,2418127-2418319,2419011-2419025,
           2419859-2419975
          Length = 399

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 292 KPLNLREEQDFYGSFTNNVPKVVPSESYKVESFGDLPLMN 411
           K L+   E  FY  FT+   KV+PS+ Y     G  PL N
Sbjct: 336 KKLSQTMEPGFYHPFTSFYTKVLPSQFYATNFIG--PLQN 373


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 104 ESINYVTE--SIPQKHYTEIYKMNPSESEQRIVNKQINFDD 220
           E  N+  E  S+P K+YTE  K+N    E+   +K +   D
Sbjct: 843 EKTNFTPEKSSVPGKNYTEFEKLNDEGEEEEQNDKIVTLKD 883



 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 104  ESINYVTE--SIPQKHYTEIYKMNPSESEQRIVNKQINFDDAL-ETELADSDTI 256
            E IN+++E  S P+K YT   K N    EQ   +K    +D   E  L  +D++
Sbjct: 1160 EEINFMSEKFSDPKKFYTRFEKENDKIEEQEENDKSSTLNDKKDENTLEHTDSV 1213


>09_06_0151 -
           21237677-21237704,21237759-21237829,21238101-21238281,
           21238369-21238441,21239033-21239072,21239818-21239890,
           21240075-21240151,21241033-21241138,21241256-21241278,
           21241369-21241440
          Length = 247

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 140 KHYTEIYKMNPSESEQRIVNKQ--INFDDALETELADSDTIQKIVFQRRVLCQN 295
           +HY EIYK  P  S   +VNK       D  +  + + +T   +     VLC N
Sbjct: 103 QHYIEIYK--PIHSRANVVNKTKIAGLHDKGKATILEIETTTHVKDSGEVLCMN 154


>02_05_0602 +
           30283893-30284170,30286259-30286305,30286534-30287510,
           30287611-30287920,30288561-30290197
          Length = 1082

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 39  NILIKAVHQTVDTKSKHHTNIPKALTTLQNQYHRN 143
           ++L  AV+   + K  H +N+P+ +  LQ  YH +
Sbjct: 224 DMLTNAVNSMPNRKYFHDSNMPRLVEFLQGMYHES 258


>02_03_0065 -
           14629676-14629804,14631119-14631247,14631383-14631736,
           14631817-14632063,14632155-14632231,14632574-14632648,
           14632721-14632822,14632966-14633084,14633538-14633627,
           14634866-14635022,14635085-14635098,14635425-14635548,
           14635628-14635678,14635793-14635891,14636962-14637072
          Length = 625

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 42  ILIKAVHQTVDTKSKHHTN 98
           +L+  VH+  D + KHHTN
Sbjct: 507 LLVVIVHEAQDVEGKHHTN 525


>01_01_1228 -
           9916850-9916919,9917462-9917533,9917629-9917700,
           9917891-9918034,9918897-9918968,9920260-9920474
          Length = 214

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 229 DRASRF-RYDTENSFSEAGFMPKPLNLREEQDFYGSFTNNVPKVVPSESYKVESFGDLPL 405
           DRA R  R D  NS + +G +   L   E   +   + NN+   +P+E   +++   L L
Sbjct: 64  DRAGRVTRLDLGNS-NLSGHLAPELGHLEHLQYLELYKNNIQGTIPAELGSLKNLISLDL 122

Query: 406 MNYN 417
            N N
Sbjct: 123 YNNN 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,219,157
Number of Sequences: 37544
Number of extensions: 200528
Number of successful extensions: 530
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)