Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0617.Seq
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)                    29   2.1  
SB_29029| Best HMM Match : C1_1 (HMM E-Value=1)                        29   2.1  
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_23348| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_32685| Best HMM Match : RCSD (HMM E-Value=0.18)                     28   3.6  
SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)                  28   3.6  
SB_16945| Best HMM Match : SecA_SW (HMM E-Value=9.3e-39)               28   4.7  
SB_23818| Best HMM Match : PsbL (HMM E-Value=6.8)                      27   6.3  
SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37)                  27   6.3  
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)         27   6.3  
SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       27   8.3  

>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
          Length = 1188

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 47  DQSSASNSRHQEQTPYKYTESINYVTESIPQKH--YTEIYKMNPSESEQRIVNKQ 205
           D S +      +QTP + +ESI    E IP+K+  +    KM  SES+  IV+++
Sbjct: 497 DSSFSKGEEAVKQTPDEMSESILECFEYIPEKNTEFMTTVKMARSESKLSIVSQR 551


>SB_29029| Best HMM Match : C1_1 (HMM E-Value=1)
          Length = 250

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +2

Query: 59  ASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNP----SESEQRIVNKQINFDDAL 226
           AS S   E    + T++ N+VT  IP+ H  +  K  P    SE   R+   QI  D  +
Sbjct: 41  ASASLEGEIQRQRNTDT-NFVTVKIPEVHSGKFLKTTPLADLSEFHSRVDLAQIFEDLGV 99

Query: 227 ETELADSDTIQ 259
           ET+L+   T Q
Sbjct: 100 ETKLSQEGTEQ 110


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = +2

Query: 44  IDQSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQINFDDA 223
           +DQ+++S+S+ QE+TP    E++N    S      TE     P  +E  +       DD 
Sbjct: 680 VDQAASSSSQAQERTPTDSRENMNSSLPSTAALSSTE--AATPDVAESALQTSTPRGDD- 736

Query: 224 LETELADSDTIQKIV 268
             T+ + ++  Q IV
Sbjct: 737 --TQASTAEVAQNIV 749


>SB_23348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 262 NSFSEAGFMPKPLNLREEQDFYGSFTNNVPK 354
           + FS+    P+P+NL+E ++      NN+PK
Sbjct: 18  SDFSDDDAEPRPINLKEVEESIEKSANNLPK 48


>SB_32685| Best HMM Match : RCSD (HMM E-Value=0.18)
          Length = 530

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 8/16 (50%), Positives = 15/16 (93%)
 Frame = -1

Query: 384 FNFIRLRWNYFRYIIR 337
           ++++R+R+NY+ YIIR
Sbjct: 244 YDYVRIRYNYYEYIIR 259


>SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)
          Length = 165

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 30  PMYNILIKAVHQTVDTKSKHHTNIPKALTTLQNQYHRNITQKY 158
           P +    K  H+   T   H+T IP+   T   Q+   +T +Y
Sbjct: 29  PQHQNTAKPQHRNTTTPRYHNTAIPQHRDTATQQHRNTVTPRY 71


>SB_16945| Best HMM Match : SecA_SW (HMM E-Value=9.3e-39)
          Length = 540

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 2   KEEANHLFKANVQYIDQSSASNSRHQEQT 88
           K EA +L KA VQ   + + SN+R+Q+Q+
Sbjct: 461 KREALNLSKAEVQNSTEQAISNARNQQQS 489


>SB_23818| Best HMM Match : PsbL (HMM E-Value=6.8)
          Length = 377

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 280 GFMPKPLNLREEQDFYGSFTNNVPKVVPSESYKVESFGD 396
           GF P P    +   FY S    V  +V   SY + S+GD
Sbjct: 9   GFGPIPERRNQRTPFYASIGMIVVIIVAFTSYHITSYGD 47


>SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37)
          Length = 509

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 396 VTEAFNFIRLRWNYFRYIIRKRTI 325
           V EA NF  LR  +FRYII   T+
Sbjct: 315 VLEAINFQCLRCRFFRYIISNYTL 338


>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
          Length = 636

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 45  LIKAVHQTVDTKSKHHTNIPKALT-TLQNQYHRN-ITQKYTK*ILRKVNKE 191
           LIK   + + T+ KHH NIP  +  + Q    RN +     + I  K NK+
Sbjct: 581 LIKPAGRPMQTQGKHHRNIPVIMNQSCQPNLDRNFVKSSEMQQICEKQNKQ 631


>SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 263 FSVSYRNLLALSLMHHQNLFAC*LFFV 183
           F+VSY  + A  L+H+ N F   + FV
Sbjct: 214 FTVSYNTIYAFKLLHYSNSFVNPIIFV 240


>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 396 VTEAFNFIRLRWNYFRYIIRKRTI 325
           V EA NF  LR  +FRYII   T+
Sbjct: 923 VLEAINFQCLRCRFFRYIISNYTL 946


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 6   KKQTIYSKPMYNILIKAVHQTVDTKSKHHTNIPKALTTLQN 128
           +++TI  KP   +L++   Q   T+  H T++    TTL N
Sbjct: 388 REETISQKPFIEVLLRITEQVKWTRDHHETHV----TTLPN 424


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,781,059
Number of Sequences: 59808
Number of extensions: 259139
Number of successful extensions: 797
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)