Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0617.Seq
         (489 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00520-1|AAA17932.1|  125|Homo sapiens immunoglobulin heavy chai...    31   2.1  
AK092226-1|BAC03832.1|  391|Homo sapiens protein ( Homo sapiens ...    29   6.5  

>U00520-1|AAA17932.1|  125|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 125

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 21/66 (31%), Positives = 28/66 (42%)
 Frame = +2

Query: 56  SASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQINFDDALETE 235
           S S+     Q P K  E I+Y++E+   KHY +  K   + S     N      D   T 
Sbjct: 29  SGSSMNWVRQAPGKRLEYISYISETSQTKHYADSVKGRVTISRDNAKNSL----DLQMTS 84

Query: 236 LADSDT 253
           L D DT
Sbjct: 85  LRDEDT 90


>AK092226-1|BAC03832.1|  391|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34907 fis, clone NT2RI2003392. ).
          Length = 391

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
 Frame = -1

Query: 114 LMLSVYLY---GVC---SWCRLFDALL*SIYCTL 31
           L  SVY +   G+C   SWCR FD LL S  C L
Sbjct: 113 LTSSVYFFVFLGLCTWWSWCRTFDPLLFSCLCVL 146


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,146,164
Number of Sequences: 237096
Number of extensions: 1163614
Number of successful extensions: 6113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6113
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)