Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0617.Seq
(489 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical pr... 30 1.0
U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical pr... 29 2.4
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 28 4.2
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 28 4.2
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 28 4.2
Z81537-9|CAB04376.2| 673|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z81537-5|CAB04381.2| 673|Caenorhabditis elegans Hypothetical pr... 27 5.5
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr... 27 7.3
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 27 9.7
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 27 9.7
>Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 295 PLNLREEQDFYGSFTNNVPKVVPSESYKVES 387
P+N + E F+ N + K+V S YK+E+
Sbjct: 203 PVNFQRELKFFRDEQNRIKKIVSSRKYKIET 233
>Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 295 PLNLREEQDFYGSFTNNVPKVVPSESYKVES 387
P+N + E F+ N + K+V S YK+E+
Sbjct: 203 PVNFQRELKFFRDEQNRIKKIVSSRKYKIET 233
>U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical
protein T20F7.1 protein.
Length = 773
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 128 SIPQKHYTEIYKMNPSESEQRIVNKQINFDDALETE 235
+IP++H E+Y MN S+ E ++N + ++ + E
Sbjct: 4 AIPKQHSAEVYPMNLSDEEIDVINSGDDDEEIMRGE 39
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/80 (20%), Positives = 32/80 (40%)
Frame = +2
Query: 35 VQYIDQSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQINF 214
+ + +S + R Q TP +ES++ PQ+ + M P + ++ +Q
Sbjct: 687 IHELAKSRENQQRQQSATPKTPSESVSTTGVVTPQRQFLPPQMMQPGTPQSILLQQQQQQ 746
Query: 215 DDALETELADSDTIQKIVFQ 274
+ A IQ++ Q
Sbjct: 747 QQQQQQAAAQHQIIQQMQMQ 766
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/80 (20%), Positives = 32/80 (40%)
Frame = +2
Query: 35 VQYIDQSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQINF 214
+ + +S + R Q TP +ES++ PQ+ + M P + ++ +Q
Sbjct: 669 IHELAKSRENQQRQQSATPKTPSESVSTTGVVTPQRQFLPPQMMQPGTPQSILLQQQQQQ 728
Query: 215 DDALETELADSDTIQKIVFQ 274
+ A IQ++ Q
Sbjct: 729 QQQQQQAAAQHQIIQQMQMQ 748
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/80 (20%), Positives = 32/80 (40%)
Frame = +2
Query: 35 VQYIDQSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQINF 214
+ + +S + R Q TP +ES++ PQ+ + M P + ++ +Q
Sbjct: 669 IHELAKSRENQQRQQSATPKTPSESVSTTGVVTPQRQFLPPQMMQPGTPQSILLQQQQQQ 728
Query: 215 DDALETELADSDTIQKIVFQ 274
+ A IQ++ Q
Sbjct: 729 QQQQQQAAAQHQIIQQMQMQ 748
>Z81537-9|CAB04376.2| 673|Caenorhabditis elegans Hypothetical
protein F41D3.10 protein.
Length = 673
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 152 EIYKMNPSESEQRIVNKQINFDDAL 226
E +KM P E E+ N +N+DDA+
Sbjct: 378 EHFKMGPKEKEEVEKNVALNYDDAI 402
>Z81537-5|CAB04381.2| 673|Caenorhabditis elegans Hypothetical
protein F41D3.5 protein.
Length = 673
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 152 EIYKMNPSESEQRIVNKQINFDDAL 226
E +KM P E E+ N +N+DDA+
Sbjct: 378 EHFKMGPKEKEEVEKNVALNYDDAI 402
>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
protein T04G9.1 protein.
Length = 1610
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 323 KSCSSLRLRGFGIKPASEKLFSVSYRNLLALSLMHHQNL 207
++C S++ F + +S+ S RNLL L LM L
Sbjct: 845 RTCDSIKRVRFSLDCSSKNSISTKERNLLTLKLMRKYQL 883
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
protein C23F12.1a protein.
Length = 2329
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 385 SFGDLPLMNYNSKLDSVSSYH 447
SF P +NYN + D VS+Y+
Sbjct: 681 SFPSAPTINYNERSDEVSNYN 701
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
protein C23F12.1b protein.
Length = 2747
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 385 SFGDLPLMNYNSKLDSVSSYH 447
SF P +NYN + D VS+Y+
Sbjct: 681 SFPSAPTINYNERSDEVSNYN 701
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,615,918
Number of Sequences: 27780
Number of extensions: 211862
Number of successful extensions: 684
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -