Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0617.Seq
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32090.1 68414.m03949 early-responsive to dehydration protein...    30   0.73 
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    30   0.96 
At3g03730.1 68416.m00378 F-box family protein contains F-box dom...    29   1.7  
At5g26140.1 68418.m03109 lysine decarboxylase family protein con...    29   2.2  
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont...    27   5.1  
At1g42550.1 68414.m04906 expressed protein                             27   6.8  
At4g33770.1 68417.m04794 inositol 1,3,4-trisphosphate 5/6-kinase...    27   9.0  
At4g30150.1 68417.m04287 expressed protein                             27   9.0  
At3g59110.1 68416.m06590 protein kinase family protein contains ...    27   9.0  
At1g79200.1 68414.m09234 expressed protein                             27   9.0  
At1g20830.1 68414.m02609 expressed protein                             27   9.0  

>At1g32090.1 68414.m03949 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 806

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +2

Query: 17  HLFKANVQYIDQSSASNSRHQEQTPY----KY-TESINYVTESIPQKHYTEIYKMNPSES 181
           H F+  V+    SS+    HQE+TP     K+ T+S + VTE     H+  +Y      S
Sbjct: 717 HSFEKEVELSSSSSSEKETHQEETPEVRVDKHETQSSSPVTELGTSSHHHHVYNSTSPSS 776


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
            MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
            thaliana]
          Length = 1294

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 340  NNVPKVVPSESYKVESFGDLPLMNYNSKLDSVSSY 444
            + VP V+ S+   V SFGDL   N  SKL    SY
Sbjct: 1238 HRVPTVIDSDMVMVLSFGDLVEYNEPSKLMETDSY 1272


>At3g03730.1 68416.m00378 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 393

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +2

Query: 119 VTESIPQKHYTEIYKMNPSESEQRIVNKQINFDDALETEL 238
           +  S P+K + ++YK++P  SE R++ K I  D+AL  +L
Sbjct: 280 IISSNPKKCFVKLYKIDPKSSEWRLI-KSIG-DEALILDL 317


>At5g26140.1 68418.m03109 lysine decarboxylase family protein
           contains Pfam profile PF03641: decarboxylase family
           protein
          Length = 143

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 289 PKPLNLREEQDFYGSFTNNVPKVVPSESYKVESFGDLPLMNYN 417
           P    L E+ + Y   T +   +   +S+KVE  GD PL+N N
Sbjct: 101 PSARELMEKMELY---TPSHKYIASHQSWKVEPLGDYPLLNEN 140


>At1g45616.1 68414.m05200 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to disease resistance
           protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
          Length = 994

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +1

Query: 238 SRFRYDTENSFSEAGFMPKPLNLREEQDFYGSFTNNVPKVVPSESYKVESFGDLPLMNYN 417
           ++ RY    S    GF+P  ++     +F+ +  N+    +PS  + + S   L L +YN
Sbjct: 374 NQLRYIDICSNHFTGFLPPTISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGL-SYN 432

Query: 418 SKLDSVS 438
              D+ +
Sbjct: 433 QLNDTTN 439


>At1g42550.1 68414.m04906 expressed protein
          Length = 708

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 176 ESEQRIVNKQINFDDALETELAD 244
           E +  +V+K + FDD LETE +D
Sbjct: 251 EPDFEVVDKGVEFDDDLETEKSD 273


>At4g33770.1 68417.m04794 inositol 1,3,4-trisphosphate 5/6-kinase
           family protein contains Pfam doamin PF05770 Inositol 1,
           3, 4-trisphosphate 5/6-kinase; contains weak similarity
           to inositol phosphate kinase (GI:27549256) [Zea mays]
          Length = 391

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 119 VTESIPQKHYTEIYKMNPSESEQRIVNKQINFDDALETELAD 244
           V E   QKH  E+  ++P  S QRI N+Q       + +L+D
Sbjct: 141 VIEDYQQKH-PEVTVLDPPGSIQRIYNRQSMLQGMADLKLSD 181


>At4g30150.1 68417.m04287 expressed protein
          Length = 2009

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 53  SSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSES 181
           + ASN+R  E+ P+K  ++      S  + HY+   ++   +S
Sbjct: 442 TKASNARQAEERPWKLADTATNDNGSSTKSHYSSSLRLETRKS 484


>At3g59110.1 68416.m06590 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 512

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 175 RRIHFVYFCVMFLWY*FCNVVNAFGIFVWCLL 80
           +++ F+    M LW   C VV  F + V+C+L
Sbjct: 13  KKVSFLGLKGMKLWVLICLVVGTFVVLVFCIL 44


>At1g79200.1 68414.m09234 expressed protein
          Length = 159

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 50  QSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQINFDDALE 229
           +SS S     ++   K+TES + + E IP+    + +  N   +      K+  F+D L 
Sbjct: 58  KSSTSKKSKDDKPKKKHTESDHKLKEGIPELSMEDYFSKNNEFATWLKEEKRTYFND-LT 116

Query: 230 TELA 241
           TE A
Sbjct: 117 TEAA 120


>At1g20830.1 68414.m02609 expressed protein
          Length = 349

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 11  ANHLFKANVQYIDQSSASNSRHQEQ-TPYK 97
           ANH F   V  IDQ  A N+ +Q+Q  P++
Sbjct: 251 ANHPFATTVSDIDQDLAQNNVYQKQGVPFR 280


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,693,441
Number of Sequences: 28952
Number of extensions: 185427
Number of successful extensions: 548
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)