Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0616.Seq
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 117 1e-27
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 117 1e-27
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 83 2e-17
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 30 0.22
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 30 0.22
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 28 0.87
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar... 28 0.87
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi... 27 1.5
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 3.5
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 25 4.6
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 6.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.1
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 25 8.1
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 8.1
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 117 bits (281), Expect = 1e-27
Identities = 50/115 (43%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
Frame = -3
Query: 372 IAEPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEI 193
+ EPY+ +G PNLK+VREL+ + ++E L K++ + +EDLIHEI
Sbjct: 137 VVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEI 196
Query: 192 FTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLXRMV 31
+TVG FK A+NF+WPF+L++P GGWR +K H+++GGD G R++ IN L+ +M+
Sbjct: 197 YTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKML 251
Score = 58.8 bits (136), Expect = 4e-10
Identities = 29/52 (55%), Positives = 33/52 (63%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
GIN + K RK+ QL RL QINNGVFV+ NKAT ML+ GIP LK
Sbjct: 99 GINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLK 150
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 117 bits (281), Expect = 1e-27
Identities = 52/115 (45%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Frame = -3
Query: 372 IAEPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEI 193
+ EPY+ +G PN K+VREL+ + ++E L K++ + VEDLIHEI
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEI 195
Query: 192 FTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLXRMV 31
+TVG FK A+NFLWPFKL++P GGWR +K H+++GGD G R++ IN L+ +M+
Sbjct: 196 YTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKML 250
Score = 53.6 bits (123), Expect = 2e-08
Identities = 26/52 (50%), Positives = 31/52 (59%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
GIN + K RK+ QL RL QINNG+FV+ NKA ML+ GIP K
Sbjct: 98 GINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHK 149
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 83.4 bits (197), Expect = 2e-17
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Frame = -3
Query: 372 IAEPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEI 193
I EPY+ +G PNL SVREL+ + L+E+ L K++ I +ED+IHEI
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEI 194
Query: 192 FTVGEKFKYASNFLWPFKLNNPTGG-WRKKTIHYVDGGDFGNREDKINDLLXRMV 31
+ VG FK + FLWPF L KK H+ +G G ++IN+L+ + V
Sbjct: 195 YNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKKQV 249
Score = 49.6 bits (113), Expect = 2e-07
Identities = 25/51 (49%), Positives = 30/51 (58%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQL 335
G+ + K+RKV +L RL +INN VFVR NKA MLR GIP L
Sbjct: 97 GVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNL 147
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 29.9 bits (64), Expect = 0.22
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 110 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQXMLCLWSL 244
LR P L L+GH + L +SP + SST +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 29.9 bits (64), Expect = 0.22
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -2
Query: 457 KVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLKE 329
++ L ++ G FV+L + TVN+++ R+ L LG+ L E
Sbjct: 65 QLNHLVAENKLQKGAFVQLTQFTVNVMKERKILIVLGLNVLTE 107
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 0.87
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 97 MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 192
MNGL P W + GP + R++ F E
Sbjct: 75 MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106
>SPBC354.02c |sec61||translocon alpha subunit
Sec61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 27.9 bits (59), Expect = 0.87
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 360 KARRYRSIFTVALFRRTNTPLFIWRSLNS 446
K R YRS F V L +NTP+ + +L S
Sbjct: 280 KFRGYRSTFPVKLLYTSNTPIMLQSALTS 308
>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
L34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 27.1 bits (57), Expect = 1.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 300 IRQAEWTTYTNHFQQLVEKRLHKHNXI 220
++Q W TY N +Q KR KH +
Sbjct: 57 MQQVRWKTYGNEYQPSNRKRKRKHGFL 83
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 3.5
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Frame = +1
Query: 1 FFYNYKSIYLNHPXEKIVDLV----FAVTKVSPVDI-MNGLLAPTTSWI--VQFEGPQEI 159
F N I++ P +K ++L+ +A++ V +I N +L+ T+ I V +
Sbjct: 386 FLPNLLEIWVQQPPDKRLELLELVQYALSNVDSDEIPSNVMLSVCTNLINEVASQNKYSS 445
Query: 160 TRVLELFSNSEDLMDEVLNTDXVVFMEPLLNKLLEVIGIRCPLSLANPRS 309
T + ++ +N E ++E + ++ + LLN + VIG L L NP S
Sbjct: 446 TEISQITTNRE--VEE--ENEEILLV--LLNIISSVIGRNAELDLENPIS 489
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.4 bits (53), Expect = 4.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 130 IVQFEGPQEITRVLELFSNSEDLMDEVLNTDXVVFMEPLLNKL---LEVIGIRCPLSLAN 300
++ F I L LFS +D+M+ LN + L L +++G R PLSL +
Sbjct: 75 LLNFTQKNPILASLFLFSTDKDIMNSSLNPASQAYTFDLGRTLPISEDILGYRKPLSLTD 134
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 6.1
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 88 VDIMNGLLAPTTSWIVQFEGPQEITRVLELFSN-----SEDLMDEVLNTDXVVFMEPLLN 252
++I + L AP+ SW + E+ +L + S + + +E+ TD V + L N
Sbjct: 763 LEIDSNLFAPSNSWFNSWHSRLELDSILAIISQFSLPVYKKMNEELSTTDEAVKL--LAN 820
Query: 253 KLLEVIGIRCP 285
+L + R P
Sbjct: 821 SVLNDVHPRVP 831
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 6.1
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +1
Query: 4 FYNYKSIYLNHPXEKIVDLVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFS 183
F + ++ HP + + K+ + I++ L VQ + E+ ++ LF
Sbjct: 1729 FSIFYEVFFQHPSTNVYANDEGI-KIGALQIISFFLKNVPEITVQHQ--TEMLKMCSLFG 1785
Query: 184 NSEDLMDEVLN 216
NSED+M + L+
Sbjct: 1786 NSEDVMIKQLS 1796
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 8.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 136 QFEGPQEITRVLELFSNSEDLMDEVLNTDXVVFMEPLLNKLLEVIGI 276
QFE EI + ++ MD+ L D + L+NK+L+ IG+
Sbjct: 131 QFERENEIMEQRQ--EMIDENMDDALEEDDEEEADELVNKVLDEIGV 175
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 24.6 bits (51), Expect = 8.1
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 237 HKH-NXICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVD 88
H+H + +C + + VGE + F+ F +N T KKT+ +V+
Sbjct: 106 HQHYSRVCRNGIDINLIVVGESSLGKTTFVNSFLQSNDTNFRPKKTMDFVE 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,265
Number of Sequences: 5004
Number of extensions: 41744
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -