Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0616.Seq
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 136 7e-33
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 126 1e-29
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 79 1e-15
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 31 0.66
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 28 4.6
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 27 6.1
10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187... 27 8.1
09_03_0206 + 13485420-13486439 27 8.1
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 136 bits (330), Expect = 7e-33
Identities = 62/111 (55%), Positives = 78/111 (70%)
Frame = -3
Query: 366 EPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEIFT 187
EPY+A+GYPNLKSVREL+ + +++E+ L KH+ IC+EDL+HEI T
Sbjct: 134 EPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMT 193
Query: 186 VGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLXRM 34
VG FK A+NFLWPFKL P GG +KK HYV+GGD GNRED IN+L+ RM
Sbjct: 194 VGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRM 244
Score = 59.7 bits (138), Expect = 1e-09
Identities = 29/52 (55%), Positives = 35/52 (67%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
GIN + K RK+ QL RLRQI NGVF+++NKAT+NMLR G P LK
Sbjct: 94 GINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLK 145
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 126 bits (303), Expect = 1e-29
Identities = 61/117 (52%), Positives = 78/117 (66%), Gaps = 6/117 (5%)
Frame = -3
Query: 366 EPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKR------LHKHNXICVEDL 205
EPY+A+GYPNLKSVREL+ + +++E+ L KH+ IC+EDL
Sbjct: 133 EPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDL 192
Query: 204 IHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLXRM 34
+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD GNRE+ IN+L+ RM
Sbjct: 193 VHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRM 249
Score = 59.7 bits (138), Expect = 1e-09
Identities = 29/52 (55%), Positives = 35/52 (67%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
GIN + K RK+ QL RLRQI NGVF+++NKAT+NMLR G P LK
Sbjct: 93 GINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLK 144
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 79.4 bits (187), Expect = 1e-15
Identities = 38/98 (38%), Positives = 58/98 (59%)
Frame = -3
Query: 372 IAEPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEI 193
+ EP+I +G+PNLK+V++L+ + + L+EK L ++ IC+EDL+HEI
Sbjct: 134 VVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEI 193
Query: 192 FTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGD 79
+VG F+ ASNFL PFKL P + K + DG +
Sbjct: 194 ASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGAE 231
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
G + +R++ + RL Q+ GVF++ AT+ L G P LK
Sbjct: 96 GTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLK 147
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 30.7 bits (66), Expect = 0.66
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +1
Query: 58 LVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDXVVFM 237
+V A +++ + + L+ + W+ G ++LEL N+E + D+VL + + M
Sbjct: 1112 IVSASSRILDGECTSSALSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVM 1171
Query: 238 EPLLNKLLEVIG 273
+ + L +IG
Sbjct: 1172 PKIYSLLSNLIG 1183
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 267 HFQQLVEKRLHKHNXICVEDLIHEI 193
H + K LH+H I VEDL+H +
Sbjct: 102 HTPCINHKHLHRHYSIGVEDLVHHV 126
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 110 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQXMLCLWSL 244
LR P + GH+K ++Y+ F T +++ +ST L LW +
Sbjct: 545 LRNPSAPVHVFGGHKKAVSYVKFLSTNELA--SASTDSTLRLWDV 587
>10_08_0941 -
21717703-21718091,21718454-21718564,21718707-21718791,
21718885-21719106,21719804-21720292,21722206-21722322
Length = 470
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 161 LAYLNFSPTVKISWMRSSTQXMLCLWSLFSTSC 259
+AY +SP + S Q L +WSL +T+C
Sbjct: 93 IAYARWSPDSRHILTTSEFQLRLTVWSLVNTAC 125
>09_03_0206 + 13485420-13486439
Length = 339
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +3
Query: 201 G*GPQHRXCCVYGASS---QQAVGSDWYTLSTQLGESTFXXLTHGHSLSWGIPKQCKARR 371
G GP+HR C + ++ +A + TLS G THG L+ + C R
Sbjct: 61 GGGPRHRAGCSWRRAAVRPHRARRLSYGTLSPAAGSPCLPTTTHGTLLTHSCDRMCLLSR 120
Query: 372 YR 377
R
Sbjct: 121 RR 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,490
Number of Sequences: 37544
Number of extensions: 260127
Number of successful extensions: 593
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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