Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0616.Seq
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      150   7e-37
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   28   3.6  
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   27   6.3  
SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)                       27   8.3  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  150 bits (363), Expect = 7e-37
 Identities = 71/113 (62%), Positives = 83/113 (73%)
 Frame = -3

Query: 372 IAEPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEI 193
           I +PYIA+GYPNLKSVREL+      + +          +VEK L KH  ICVEDLIHEI
Sbjct: 132 IVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVEDLIHEI 191

Query: 192 FTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLXRM 34
           FTVGE FK ASNFLWPFKL++P GG+RKKT H+V+GGD GNREDKIN L+  M
Sbjct: 192 FTVGEHFKEASNFLWPFKLSSPKGGFRKKTTHFVEGGDHGNREDKINGLVRVM 244



 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 36/52 (69%), Positives = 38/52 (73%)
 Frame = -2

Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
           GIN VS KVRK+ QL RLRQINNGVFVRLNKAT NMLR  +     G P LK
Sbjct: 94  GINGVSPKVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLK 145


>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 140 LKGHRKLLAYLNFSPTVKISWMRSSTQXMLCLWSLFS 250
           LKGH K    L+++P V  + + +S    +CLW + S
Sbjct: 239 LKGHTKEGYGLSWNPNVNGNLLSASDDHTICLWDISS 275


>SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 16  KSIYLNHPXEKIVDLVFAVTKVSPVDIMNG 105
           K IYL HP   +VD+  AV   + VDI +G
Sbjct: 13  KQIYLYHPTPNLVDVSKAVFMGAAVDIRSG 42


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 219 CVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 103
           C+   + E+ TV E F+   NFL  FK+  P     KKT
Sbjct: 346 CLCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384


>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 204 IHEIFTVGEKFKYASNFLWPFKLNN 130
           ++ + T   KF YA++ LW F  NN
Sbjct: 58  LNRVITTTGKFSYATDDLWQFSCNN 82


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = -3

Query: 252 VEKRLHKHNXICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGW 115
           + K  H    + + +   E+FTVG+++   +   + ++L    G W
Sbjct: 159 ISKVKHVFAKVYIPNWTEEVFTVGQRYNNTTQKNYAYRLREYDGSW 204


>SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)
          Length = 200

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 193 DLMDEVLNTDXVVFMEP 243
           D++ E+LNTD V+F+EP
Sbjct: 181 DIICELLNTDKVLFLEP 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,953,763
Number of Sequences: 59808
Number of extensions: 299941
Number of successful extensions: 745
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)