Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0616.Seq
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   148   2e-36
X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.        28   4.2  
U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of l...    28   4.2  
U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of l...    28   4.2  
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...    28   4.2  
Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF125964-9|AAD14749.2|  523|Caenorhabditis elegans Glutamate tra...    27   7.3  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  148 bits (359), Expect = 2e-36
 Identities = 66/114 (57%), Positives = 82/114 (71%)
 Frame = -3

Query: 372 IAEPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEI 193
           I EPY+AWGYPN K++ +L+      + +          +VE+ L K N IC+EDL HEI
Sbjct: 131 IIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEI 190

Query: 192 FTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLXRMV 31
            TVG  FK A+NFLWPFKLNNPTGGW KKT H+V+GGDFGNRED+IN+LL +MV
Sbjct: 191 ATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKMV 244



 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 29/52 (55%), Positives = 34/52 (65%)
 Frame = -2

Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
           GINQ+  K RK  Q+ RLRQINNGVFV+LNKAT+ +LR        G P  K
Sbjct: 93  GINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNK 144


>X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +1

Query: 148 PQEITRVLELFSNSEDLMDEVLNTDXVVFMEPLLNKLLEVIGIRCPLSLANPRS 309
           P   T ++ +F+ + D++ +  N    +F+E ++NK  E+I +    ++ N +S
Sbjct: 102 PDTYTHLMLIFTQNNDILQD--NDYLKIFLESMINKCKEIIKLFKTSAIYNDQS 153


>U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform a protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +1

Query: 148 PQEITRVLELFSNSEDLMDEVLNTDXVVFMEPLLNKLLEVIGIRCPLSLANPRS 309
           P   T ++ +F+ + D++ +  N    +F+E ++NK  E+I +    ++ N +S
Sbjct: 102 PDTYTHLMLIFTQNNDILQD--NDYLKIFLESMINKCKEIIKLFKTSAIYNDQS 153


>U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform b protein.
          Length = 565

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +1

Query: 148 PQEITRVLELFSNSEDLMDEVLNTDXVVFMEPLLNKLLEVIGIRCPLSLANPRS 309
           P   T ++ +F+ + D++ +  N    +F+E ++NK  E+I +    ++ N +S
Sbjct: 85  PDTYTHLMLIFTQNNDILQD--NDYLKIFLESMINKCKEIIKLFKTSAIYNDQS 136


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +1

Query: 148 PQEITRVLELFSNSEDLMDEVLNTDXVVFMEPLLNKLLEVIGIRCPLSLANPRS 309
           P   T ++ +F+ + D++ +  N    +F+E ++NK  E+I +    ++ N +S
Sbjct: 85  PDTYTHLMLIFTQNNDILQD--NDYLKIFLESMINKCKEIIKLFKTSAIYNDQS 136


>Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical
           protein R03G8.4 protein.
          Length = 786

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 306 TWIRQAEWTTYTNHFQQLVEKRLHKHNXICVED 208
           ++IR  E    T HF + +   LH H+   VED
Sbjct: 417 SFIRMLEKIVGTEHFNEAIRTYLHTHDFSNVED 449


>AF125964-9|AAD14749.2|  523|Caenorhabditis elegans Glutamate
           transporter family protein7 protein.
          Length = 523

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 19  SIYLNHPXEKIVDLVFAVTKVSPVDIMNGLLAP 117
           S++L H    +  L F +TK SP+D+  G++ P
Sbjct: 270 SLFL-HCVIAVPTLYFFITKKSPIDVAKGMVQP 301


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 70  VTKVSPVDIMNGLLAPTTSWIVQFEGPQEITR 165
           + K+S  D++N L A TT +    +GP  +TR
Sbjct: 499 IDKISGCDLINPLNATTTGYCPASDGPGILTR 530


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,145
Number of Sequences: 27780
Number of extensions: 228946
Number of successful extensions: 590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)