Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0616.Seq
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   0.11 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.11 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   1.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 216 HRXCCVYGASSQQAVGSDWYTLSTQLGESTFXXLTHGHSLSWGIPKQCKARRYR 377
           H  C  YG    Q++   W T+ + +  +T   L  GH+ +         R+YR
Sbjct: 336 HMLCIGYGRFPPQSLTDMWLTMLSMISGATCYALFLGHATNLIQSLDSSRRQYR 389


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 216 HRXCCVYGASSQQAVGSDWYTLSTQLGESTFXXLTHGHSLSWGIPKQCKARRYR 377
           H  C  YG    Q++   W T+ + +  +T   L  GH+ +         R+YR
Sbjct: 304 HMLCIGYGRFPPQSLTDMWLTMLSMISGATCYALFLGHATNLIQSLDSSRRQYR 357


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 85  PVDIMNGLLAPTTSWIVQFEG 147
           P  I+NG   P T+W+  F G
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGG 170


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 254 SCWK*LVYVVHSAWRIHVXXTNSRT 328
           SCW  + Y+V  AW I     + R+
Sbjct: 70  SCWMNVYYIVILAWAIFYFFMSMRS 94


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 85  PVDIMNGLLAPTTSWIVQFEG 147
           P  I+NG   P T+W+  F G
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGG 170


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 104 VFLRQPPVGLFNLKG 148
           +F   PP G FN+KG
Sbjct: 225 LFYPYPPYGTFNIKG 239


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 190 EDLMDEVLNTDXVVFMEPLLNKLLEVIGIRCPLSLAN 300
           E L D V     V     +   ++E+IGI C L LAN
Sbjct: 184 EALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLAN 220


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 254 SCWK*LVYVVHSAWRI 301
           SCW  + Y++  AW +
Sbjct: 108 SCWTNIYYIIILAWAL 123


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 254 SCWK*LVYVVHSAWRI 301
           SCW  + Y++  AW +
Sbjct: 161 SCWTNIYYIIILAWAL 176


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 117 NHQLDCSI*RATGNYS 164
           N+  DC+I  +TGN++
Sbjct: 186 NYTTDCTIEYSTGNFT 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,291
Number of Sequences: 438
Number of extensions: 2525
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)