Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0616.Seq
(488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 129 9e-31
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 129 9e-31
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 129 9e-31
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 129 9e-31
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 129 9e-31
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 128 3e-30
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 92 2e-19
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 31 0.32
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 30 0.73
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 30 0.96
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 30 0.96
At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 1.3
At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 1.3
At3g29400.1 68416.m03694 exocyst subunit EXO70 family protein si... 29 1.3
At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family pr... 29 1.7
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 28 2.9
At2g07180.1 68415.m00822 protein kinase, putative contains prote... 27 5.1
At1g24650.1 68414.m03102 leucine-rich repeat family protein / pr... 27 6.8
At5g44360.1 68418.m05432 FAD-binding domain-containing protein s... 27 9.0
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 27 9.0
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 129 bits (312), Expect = 9e-31
Identities = 60/111 (54%), Positives = 75/111 (67%)
Frame = -3
Query: 366 EPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEIFT 187
EPY+ +GYPNLKSV+EL+ + +V++ L KH ICVEDLIHEI T
Sbjct: 133 EPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMT 192
Query: 186 VGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLXRM 34
VG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+ RM
Sbjct: 193 VGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
GIN + K +K+ QL RLRQI NGVF+++NKAT+NMLR G P LK
Sbjct: 93 GINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLK 144
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 129 bits (312), Expect = 9e-31
Identities = 60/111 (54%), Positives = 75/111 (67%)
Frame = -3
Query: 366 EPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEIFT 187
EPY+ +GYPNLKSV+EL+ + +V++ L KH ICVEDLIHEI T
Sbjct: 133 EPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMT 192
Query: 186 VGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLXRM 34
VG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+ RM
Sbjct: 193 VGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
GIN + K +K+ QL RLRQI NGVF+++NKAT+NMLR G P LK
Sbjct: 93 GINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLK 144
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 129 bits (312), Expect = 9e-31
Identities = 60/111 (54%), Positives = 75/111 (67%)
Frame = -3
Query: 366 EPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEIFT 187
EPY+ +GYPNLKSV+EL+ + +V++ L KH ICVEDLIHEI T
Sbjct: 133 EPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMT 192
Query: 186 VGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLXRM 34
VG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+ RM
Sbjct: 193 VGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
GIN + K +K+ QL RLRQI NGVF+++NKAT+NMLR G P LK
Sbjct: 93 GINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLK 144
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 129 bits (312), Expect = 9e-31
Identities = 60/111 (54%), Positives = 75/111 (67%)
Frame = -3
Query: 366 EPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEIFT 187
EPY+ +GYPNLKSV+EL+ + +V++ L KH ICVEDLIHEI T
Sbjct: 136 EPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMT 195
Query: 186 VGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLXRM 34
VG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+ RM
Sbjct: 196 VGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRM 246
Score = 59.7 bits (138), Expect = 1e-09
Identities = 29/52 (55%), Positives = 35/52 (67%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
GIN + K +K+ QL RLRQI NGVF+++NKATVNMLR G P LK
Sbjct: 96 GINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLK 147
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 129 bits (312), Expect = 9e-31
Identities = 60/111 (54%), Positives = 75/111 (67%)
Frame = -3
Query: 366 EPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEIFT 187
EPY+ +GYPNLKSV+EL+ + +V++ L KH ICVEDLIHEI T
Sbjct: 131 EPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMT 190
Query: 186 VGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLXRM 34
VG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+ RM
Sbjct: 191 VGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRM 241
Score = 59.7 bits (138), Expect = 1e-09
Identities = 29/52 (55%), Positives = 35/52 (67%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
GIN + K +K+ QL RLRQI NGVF+++NKATVNMLR G P LK
Sbjct: 91 GINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLK 142
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 128 bits (308), Expect = 3e-30
Identities = 59/111 (53%), Positives = 74/111 (66%)
Frame = -3
Query: 366 EPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEIFT 187
EPY+ +G+PNLKSV+EL+ + +VE+ L KH IC EDLIHEI T
Sbjct: 131 EPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILT 190
Query: 186 VGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLXRM 34
VG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+ RM
Sbjct: 191 VGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRM 241
Score = 58.8 bits (136), Expect = 2e-09
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = -2
Query: 487 GINQVSXKVRKVQQLFRLRQINNGVFVRLNKATVNMLRYRRALHCLGIPQLK 332
GIN + K +K+ QL RLRQI NGVF+++NKAT+NMLR G P LK
Sbjct: 91 GINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLK 142
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 91.9 bits (218), Expect = 2e-19
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Frame = -3
Query: 366 EPYIAWGYPNLKSVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEIFT 187
+PY+ +GYPN KSV++L+ E ++E+ L +H + +EDL++EI
Sbjct: 135 QPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIAR 194
Query: 186 VGEKFKYASNFLWPFKLNNPTGG--WRKKTIHYVDGGDFGNREDKINDLLXRM 34
VG+ F+ FL P KLN P RKK + + +GGD GNREDKINDL+ +M
Sbjct: 195 VGDHFREVMRFLGPLKLNKPVADVLHRKKQV-FSEGGDTGNREDKINDLISKM 246
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 31.5 bits (68), Expect = 0.32
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +1
Query: 58 LVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDXVVFM 237
LV A ++ + + LA W+ G ++LEL N+E L+D+VL + + M
Sbjct: 1108 LVSASMRILDGECSSTALAYNLGWLSHPGGSAIAAQLLELGKNNEILIDQVLRQELALAM 1167
Query: 238 EPLLNKLLEVIG 273
+ + L ++G
Sbjct: 1168 PKIYSILARLLG 1179
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 30.3 bits (65), Expect = 0.73
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 110 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQXMLCLWSL 244
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 690 LRNPKIPLCTMIGHSKTVSYVKFVDSSTL--VSSSTDNTLKLWDL 732
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.9 bits (64), Expect = 0.96
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 110 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQXMLCLWSL 244
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDL 690
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.9 bits (64), Expect = 0.96
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 110 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQXMLCLWSL 244
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDL 690
>At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 171 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 76
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 171 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 76
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At3g29400.1 68416.m03694 exocyst subunit EXO70 family protein
similar to EXO70 protein (GI:2352998) [Mus musculus];
contains Pfam domain PF03081: Exo70 exocyst complex
subunit
Length = 658
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 303 WIRQAEWTTYTNHFQQLVEKRLHKHNXICVEDLIHEIFTVGEK 175
W+ QA WT Y+ H + V +R K+ +E L+ ++F K
Sbjct: 609 WVIQAYWTFYSRH-KNSVSERYIKYTTDDIERLLLDLFAGSSK 650
>At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family
protein contains similarity to helix-loop-helix
DNA-binding protein
Length = 294
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 163 RVLELFSNSEDLMDEVLNTDXVVFMEPLLNKLLEVIGIRCPLS 291
+V+++ + EDL E+L + E +LN IGI C LS
Sbjct: 239 QVMKIIAALEDLALEILQVNINTVDETMLNSFTIKIGIECQLS 281
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 140 LKGHRKLLAYLNFSPTVKISWMRSSTQXMLCLWSL 244
LKGH+K + L FS + I + S +C WS+
Sbjct: 900 LKGHQKRITGLAFSTALNI-LVSSGADAQICFWSI 933
>At2g07180.1 68415.m00822 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 442
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -3
Query: 375 GIAEPYIAWGYPNLK-SVRELVXXTWIRQAEWTTYTNHFQQLVEKRLHKHNXICVED--- 208
G+ + + G+ + K +++EL + EW N+ QL L K C ED
Sbjct: 107 GVIDESVRVGFKSTKVAIKELNPEGFQGDREWLAEVNYLGQLSHPNLVKLIGYCCEDDHR 166
Query: 207 -LIHEIFTVGEKFKY 166
L++E +G K+
Sbjct: 167 LLVYEYMAMGSLEKH 181
>At1g24650.1 68414.m03102 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 886
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 204 IHEIFTVGEKFKYASNFLWPFKLNNPTGGW 115
++ + ++ E F Y NF +K N+P GW
Sbjct: 327 VNTLLSIVEAFGYPVNFAEKWKGNDPCSGW 356
>At5g44360.1 68418.m05432 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 532
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 273 YTLSTQLGESTFXXLTHGHSLSWGIPKQCKARRYRSIFTVALFRRTNTPL 422
Y ++GE F + G + S+G+ K + R V FRR N PL
Sbjct: 221 YNSRREMGEDLFWAIRGGGAASFGVVLSWKVKLVRVPEKVTCFRR-NLPL 269
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 26.6 bits (56), Expect = 9.0
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 128 GLFNLKGHRKLLAYLNFSPTVKISWMRSSTQXMLCLWSLFSTSCWK*LVYVVHS-AWRI 301
GLF L+GHR + L F K + SS L +W L + C + +V HS W +
Sbjct: 140 GLFRLRGHRDQVTDLVFLDGGK-KLVSSSKDKFLRVWDLETQHCMQ-IVSGHHSEVWSV 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,438,100
Number of Sequences: 28952
Number of extensions: 212876
Number of successful extensions: 570
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -