Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0615.Seq
         (479 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    56   4e-07
UniRef50_UPI00015B60AE Cluster: PREDICTED: hypothetical protein;...    34   1.4  
UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1; Gr...    34   1.9  
UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12...    32   5.8  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 56.0 bits (129), Expect = 4e-07
 Identities = 25/28 (89%), Positives = 27/28 (96%)
 Frame = +3

Query: 171 IYGTGGLLTPLVAPVLGFSSAGIAAGST 254
           IYGTGGLLTP+VAP+LGF SAGIAAGST
Sbjct: 17  IYGTGGLLTPIVAPMLGFGSAGIAAGST 44



 Score = 35.9 bits (79), Expect = 0.47
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +2

Query: 221 FQLSGNSGRKHTAAAQAYYGNLXAGSIVSQ 310
           F  +G +     AAAQAYYGN+ AGS++SQ
Sbjct: 34  FGSAGIAAGSTAAAAQAYYGNVVAGSVISQ 63


>UniRef50_UPI00015B60AE Cluster: PREDICTED: hypothetical protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 101

 Score = 34.3 bits (75), Expect = 1.4
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -2

Query: 283 ISVVCLCSSGVLPAAIPAELKPSTGATN 200
           +++V +CS+G++PAA+PA L   T AT+
Sbjct: 10  VALVAVCSAGIVPAAVPAALTVGTYATS 37


>UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1;
           Granulibacter bethesdensis CGDNIH1|Rep: Hypothetical
           cytosolic protein - Granulobacter bethesdensis (strain
           ATCC BAA-1260 / CGDNIH1)
          Length = 90

 Score = 33.9 bits (74), Expect = 1.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 107 QKLKEHGA--SSCISGKRGRRXCNIWHWGSVDSISGSRAR 220
           Q L+EHG    S ++G+R  R CN WH G  D +   R R
Sbjct: 42  QALREHGTFQGSMLAGRRILR-CNPWHQGGYDPVPAGRCR 80


>UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12;
           Bacilli|Rep: Pyrrolidone-carboxylate peptidase -
           Bacillus subtilis
          Length = 215

 Score = 32.3 bits (70), Expect = 5.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 86  LRIARREQKLKEHGASSCISGKRGRRXCNIWHWGSVDSIS 205
           L + R   K+KEHG  + +S   G   CN   +G +D IS
Sbjct: 117 LPVKRMTAKMKEHGIPAAVSYTAGTFVCNYLFYGLMDHIS 156


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,773,843
Number of Sequences: 1657284
Number of extensions: 5921722
Number of successful extensions: 14785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14783
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)