Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0615.Seq
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.64 
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   1.9  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   4.5  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   5.9  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 174 ILQXRRPRLPLMQLEAPCSFNFCSLRA 94
           I Q     LP + L +PCSF  CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 208 LPCSVSAQRE*RQEAHRCCTSILRKFXGRQHCVTXDCCCHGSPHAM 345
           LPC+ S Q   +   H C  S LRKF      V+  C  H  P ++
Sbjct: 75  LPCTDSYQYPLK---HSCTPSFLRKFNESIENVSYKCLDHSPPDSV 117


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 180 TGGLLTPLVAPVLGFSSAGIAAGS 251
           TGGL  P VA  LG   AG+  G+
Sbjct: 189 TGGLAAPFVAAGLGTLFAGLGLGT 212


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 201 MESTDPQCHILQXRRPRLPLMQLEAPCSF 115
           M+S   Q ++L   RP LPL     P  F
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,367
Number of Sequences: 5004
Number of extensions: 23817
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)