Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0615.Seq
         (479 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   4.1  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   5.4  
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    22   9.5  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 6   LNFILKRILVLKSRTLNFLNQHSS 77
           + F+ +R+ +LKS   N  NQ+S+
Sbjct: 287 VEFLEQRVNILKSSAQNICNQYSA 310


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 217  STGATNGVNRPP 182
            STG++N  NRPP
Sbjct: 1627 STGSSNSCNRPP 1638


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 247 PAAIPAELKPSTGATNGVN 191
           P  IPA    STG T G N
Sbjct: 681 PPPIPASGSSSTGNTTGAN 699


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 393,868
Number of Sequences: 2352
Number of extensions: 6711
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 41863041
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)