Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0615.Seq
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21300.1 68415.m02535 kinesin motor family protein contains P...    29   1.2  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   8.7  
At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O...    27   8.7  
At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O...    27   8.7  

>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
 Frame = +2

Query: 110 KLKEHGASSCISGKRGRRXCNIWHWGSVDSISG----SRARFQLSGNSGRKHTAAA 265
           K+ EH ASS       R   N W  GSV  ISG     R  F   G S    TA A
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISGVVDPDRTSFISDGTSTPLSTARA 480


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -3

Query: 204 LMESTDPQCHILQXRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 58
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 259 SGVLPAAIPAELKPSTGATNGVNRPPV 179
           +G  PA++    KPS    NGV + PV
Sbjct: 603 AGSFPASVSTMAKPSVSLQNGVEKLPV 629


>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 259 SGVLPAAIPAELKPSTGATNGVNRPPV 179
           +G  PA++    KPS    NGV + PV
Sbjct: 603 AGSFPASVSTMAKPSVSLQNGVEKLPV 629


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,098,372
Number of Sequences: 28952
Number of extensions: 130326
Number of successful extensions: 291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)