Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0614.Seq
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.28 
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   0.48 
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   1.5  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   3.4  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    24   4.5  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    24   4.5  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    24   4.5  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    24   5.9  

>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 0.28
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 169 SFXGCSTVHPIAFPRIIRKLLLKE 98
           S   CS++H +AF  ++ KL++KE
Sbjct: 870 SLDDCSSIHLLAFIHVLSKLIIKE 893


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 132 SHESSGNFSSKNTSQXXEDNASKLTT 55
           S  +SGNFS   T Q   DN S  +T
Sbjct: 593 SRNASGNFSMSQTHQPTTDNTSSFST 618


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 104 EEKFPDDSWESNWVYS 151
           EEKFPD +W  +W  S
Sbjct: 251 EEKFPDIAWRVSWSLS 266


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 131 PTNHQETS---PQRIHXNXXKIMPAS*QRPVQQLSFSIHSTTF 12
           PT H  T+   P   H N    +P + +  +  ++   ++TTF
Sbjct: 136 PTTHVNTTTVVPPTTHANTTSFVPTTTESSIHPITTGFYNTTF 178


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 149 CTPNCFPTNHQETSPQRIHXNXXKIMPAS*Q 57
           C P  FP N+QE      H     I  AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 126 ESSGNFSSKNTSQXXEDNASKLTTTSTTAFIFDSQYHLXQQK 1
           E+   FSS+ T +     ++ L TT+ T+ I D   H   +K
Sbjct: 111 ENKKVFSSQTTKRQSRKQSTAL-TTNDTSIILDDSLHTNSKK 151


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 143 PNCFPTNHQETS 108
           PN FPTNHQ  S
Sbjct: 439 PNLFPTNHQGIS 450


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 268 GXSID-LASSXVFKPLSSCGSLKNFPAVNLNFPNSFXGCSTVH 143
           G S D L++S    P  + GS+  +     +  NSF G  +VH
Sbjct: 15  GSSTDTLSTSASLHPSMNAGSVNEYSEQQRHGTNSFNGKPSVH 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,032,134
Number of Sequences: 5004
Number of extensions: 15415
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)