Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0614.Seq
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 34 0.020
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 32 0.080
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 32 0.080
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 32 0.080
11_06_0348 - 22561589-22563656,22563788-22564602 29 0.98
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 1.3
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166 27 3.0
10_07_0140 - 13334039-13334206,13334297-13334425,13334512-133345... 27 4.0
08_02_0799 - 21317728-21317895,21318018-21318146,21318396-213184... 26 5.2
07_01_0818 - 6548171-6548479,6550023-6550175,6550569-6550704,655... 26 6.9
12_01_0163 - 1230127-1230400,1231622-1231992 25 9.2
03_06_0578 + 34858329-34858699,34859922-34860150,34860798-34860827 25 9.2
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 34.3 bits (75), Expect = 0.020
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 174 GKFKLTAGKFFSDPQDDKGLKTXEDAR 254
G FK TAG++ DP DDKG++T DAR
Sbjct: 56 GTFKHTAGRYSGDP-DDKGIQTTLDAR 81
Score = 29.9 bits (64), Expect = 0.43
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 92 DVFFEEKFPDDSWESNWVYS 151
+V FEE+F +D WES WV S
Sbjct: 28 EVIFEERF-EDGWESRWVKS 46
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 32.3 bits (70), Expect = 0.080
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 92 DVFFEEKFPDDSWESNWVYS 151
+VFF+EKF +D WES WV S
Sbjct: 30 EVFFQEKF-EDGWESRWVKS 48
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 174 GKFKLTAGKFFSDPQDDKGLKTXEDAR 254
G++ T+GK+ DP +DKG++T ED R
Sbjct: 58 GEWNHTSGKWNGDP-EDKGIQTSEDYR 83
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 32.3 bits (70), Expect = 0.080
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 174 GKFKLTAGKFFSDPQDDKGLKTXEDAR 254
G FK TAG + DP DD+G++T DA+
Sbjct: 56 GTFKHTAGSYSGDP-DDRGIQTTSDAK 81
Score = 28.7 bits (61), Expect = 0.98
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 92 DVFFEEKFPDDSWESNWVYS 151
+V FEE+F DD W S WV S
Sbjct: 28 EVIFEERF-DDDWGSRWVKS 46
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 32.3 bits (70), Expect = 0.080
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 92 DVFFEEKFPDDSWESNWVYS 151
+VFF+EKF DD WE WV S
Sbjct: 26 EVFFQEKF-DDGWEDRWVKS 44
>11_06_0348 - 22561589-22563656,22563788-22564602
Length = 960
Score = 28.7 bits (61), Expect = 0.98
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Frame = +3
Query: 138 IGCTVEH------PXKEFGKFKLTAGKFFSDPQDDKGLK 236
+GC++E P K +FK+TAGKF + PQ +GL+
Sbjct: 724 LGCSMEFLRSLSDPPKFLDEFKVTAGKFANVPQWIEGLE 762
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 126 ESSGNFSSKNTSQXXEDNASKLTTTSTTA 40
ES+G SSK + E++ + TTTSTTA
Sbjct: 59 ESAGVSSSKKKRRIEEESPAATTTTSTTA 87
>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
Length = 983
Score = 27.1 bits (57), Expect = 3.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 122 DSWESNWVYSXAPXKR 169
D W+S+W Y+ +P KR
Sbjct: 157 DDWKSDWFYTPSPTKR 172
>10_07_0140 -
13334039-13334206,13334297-13334425,13334512-13334592,
13334805-13334909,13334991-13335107,13335237-13335377,
13335540-13335614,13335897-13335992,13336141-13336252,
13336334-13336407,13336753-13336834,13336917-13337209
Length = 490
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 116 PDDSWESNWVYSXAPXKRIW 175
PD SW WV+ P K+I+
Sbjct: 142 PDCSWVEQWVHRAGPRKQIY 161
>08_02_0799 -
21317728-21317895,21318018-21318146,21318396-21318457,
21318519-21318534,21318590-21318694,21318993-21319133,
21319338-21319412,21319510-21319611,21319697-21319792,
21320340-21320451,21320642-21320715,21321016-21321097,
21321201-21321508
Length = 489
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 116 PDDSWESNWVYSXAPXKRIW 175
PD SW WV+ P K I+
Sbjct: 147 PDCSWVEQWVHRAGPRKEIY 166
>07_01_0818 -
6548171-6548479,6550023-6550175,6550569-6550704,
6550832-6551050,6551152-6551530,6551794-6552055,
6554132-6554200
Length = 508
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 168 EFGKFKLTAGKFFSD--PQDDKGLKTXEDARSML 263
EF KFK G F SD D KGL + +A +L
Sbjct: 112 EFNKFKAEDGSFSSDDITNDPKGLLSLYNAAHLL 145
>12_01_0163 - 1230127-1230400,1231622-1231992
Length = 214
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 126 RGKAIGCTVEHPXKEFGKFKLTAGKFFSDPQDDKGLK 236
RGKA +++ + G + DP DD GL+
Sbjct: 152 RGKAKDVSIDEDKSSDDDVDMVIGGYAQDPYDDSGLE 188
>03_06_0578 + 34858329-34858699,34859922-34860150,34860798-34860827
Length = 209
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 126 RGKAIGCTVEHPXKEFGKFKLTAGKFFSDPQDDKGLK 236
RGKA +++ + G + DP DD GL+
Sbjct: 152 RGKAKDVSIDEDKSSDDDVDMVIGGYAQDPYDDSGLE 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,587,418
Number of Sequences: 37544
Number of extensions: 96705
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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