Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0614.Seq
         (309 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   8e-05
SB_4687| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.33 
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.33 
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)             26   7.2  
SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09)                 25   9.5  
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +3

Query: 174 GKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           GKFK TAGKF+ D + DKG++T EDA+
Sbjct: 782 GKFKWTAGKFYGDAEADKGIQTSEDAK 808



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +2

Query: 86  NXDVFFEEKFPDDSWESNWVYSXAPXKRIWKV*IDCWKVLQRPTG*QRFENL*RC*VYAL 265
           N  V F EKF D SWE  WV S +   +  K      K        +  +       Y +
Sbjct: 753 NPVVHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGI 812

Query: 266 SRXF-KPXSXEGKPL 307
           S  F KP + EGK L
Sbjct: 813 SAKFEKPFTNEGKTL 827


>SB_4687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 104 EEKFPDDSWESNWVYSXAPXKRIWKV 181
           E +FPD++ E +  +S    KRIWKV
Sbjct: 84  ETRFPDENTEKSRFFSCKTLKRIWKV 109


>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = -3

Query: 268 GXSIDLASSXVFKPLSSCGSLKNFPAVNLNFPNSFXGCSTVHPIAFPRIIRKLLLKEYIX 89
           G   D+  + V + LS+   + +F  V++    S     T H +  P++IRK+ LK+Y+ 
Sbjct: 36  GVPRDVRIAEVKRDLSTLHHVVSFHNVHVWALTSGRNLLTAHLVVAPKLIRKMPLKDYVV 95

Query: 88  IXXR*CQQADND 53
                C  A  D
Sbjct: 96  CDFLYCLIASFD 107


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 132  SHESSGNFSSKNTSQXXEDNASKLTTTSTTAFIFDSQYH 16
            S  SS + SS ++ +    N   LT TST A + +  YH
Sbjct: 979  SSSSSSSSSSSSSRRSSASNNDFLTATSTLAMLSNGLYH 1017


>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
          Length = 818

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 165 KEFGKFKLTAGKFFSDPQDDKGLKTXEDARSMLXPVXSNR 284
           K+ GKFK  AG+  +D  +D G +  EDA S + P  +++
Sbjct: 556 KDGGKFK--AGESTADSHEDSGKEQEEDA-SKVPPTDASK 592


>SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09)
          Length = 925

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 78  DNASKLTTTSTTAFIFDSQYHLXQ 7
           DNA++L TTST    F    HL Q
Sbjct: 214 DNATELRTTSTVYRTFSMMRHLAQ 237


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 144 CTVEHPXKEFGKFKLTAGKFFSDPQDDK 227
           C V +P K  GK  +T G+   D  D+K
Sbjct: 780 CKVHNPLKNSGKNAVTEGEEAKDKTDEK 807


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,578,334
Number of Sequences: 59808
Number of extensions: 118234
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)