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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0614.Seq
         (309 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M84739-1|AAA51916.1|  417|Homo sapiens calreticulin protein.           44   1e-04
M32294-1|AAA36582.1|  417|Homo sapiens protein ( Human Ro ribonu...    44   1e-04
CR457070-1|CAG33351.1|  417|Homo sapiens CALR protein.                 44   1e-04
BT007448-1|AAP36116.1|  417|Homo sapiens calreticulin protein.         44   1e-04
BC020493-1|AAH20493.1|  417|Homo sapiens calreticulin protein.         44   1e-04
BC007911-1|AAH07911.1|  417|Homo sapiens calreticulin protein.         44   1e-04
BC002500-1|AAH02500.1|  417|Homo sapiens calreticulin protein.         44   1e-04
AY047586-1|AAL13126.1|  417|Homo sapiens calreticulin protein.         44   1e-04
AK223060-1|BAD96780.1|  406|Homo sapiens calreticulin precursor ...    44   1e-04
AD000092-6|AAB51176.1|  417|Homo sapiens calreticulin protein.         44   1e-04
BC014595-1|AAH14595.1|  384|Homo sapiens calreticulin 3 protein.       36   0.032
AK058084-1|BAB71655.1|  384|Homo sapiens protein ( Homo sapiens ...    36   0.032
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    28   6.4  
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.             28   6.4  

>M84739-1|AAA51916.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45  DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73


>M32294-1|AAA36582.1|  417|Homo sapiens protein ( Human Ro
           ribonucleoprotein autoantigen (Ro/SS-A), complete cds.
           ).
          Length = 417

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45  DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73


>CR457070-1|CAG33351.1|  417|Homo sapiens CALR protein.
          Length = 417

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45  DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73


>BT007448-1|AAP36116.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45  DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73


>BC020493-1|AAH20493.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45  DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73


>BC007911-1|AAH07911.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45  DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73


>BC002500-1|AAH02500.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45  DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73


>AY047586-1|AAL13126.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45  DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73


>AK223060-1|BAD96780.1|  406|Homo sapiens calreticulin precursor
           variant protein.
          Length = 406

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 34  DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 62


>AD000092-6|AAB51176.1|  417|Homo sapiens calreticulin protein.
          Length = 417

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45  DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73


>BC014595-1|AAH14595.1|  384|Homo sapiens calreticulin 3 protein.
          Length = 384

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +3

Query: 171 FGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           FG F+L++GKF+   + DKGL+T ++ R
Sbjct: 46  FGHFRLSSGKFYGHKEKDKGLQTTQNGR 73



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  VFFEEKFPD-DSWESNWVYSXAPXKRIWKV*IDCWKVLQRPTG*QRFENL*RC*VYALSR 271
           V+F+E+F D + W + W+ S     R     +   K        +  +       YA+S 
Sbjct: 21  VYFQEEFLDGEHWRNRWLQS-TNDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGRFYAISA 79

Query: 272 XFKPXSXEGKPL 307
            FKP S +GK L
Sbjct: 80  RFKPFSNKGKTL 91


>AK058084-1|BAB71655.1|  384|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25355 fis, clone TST01593. ).
          Length = 384

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +3

Query: 171 FGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           FG F+L++GKF+   + DKGL+T ++ R
Sbjct: 46  FGHFRLSSGKFYGHKEKDKGLQTTQNGR 73



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  VFFEEKFPD-DSWESNWVYSXAPXKRIWKV*IDCWKVLQRPTG*QRFENL*RC*VYALSR 271
           V+F+E+F D + W + W+ S     R     +   K        +  +       YA+S 
Sbjct: 21  VYFQEEFLDGEHWRNRWLQS-TNDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGRFYAISA 79

Query: 272 XFKPXSXEGKPL 307
            FKP S +GK L
Sbjct: 80  RFKPFSNKGKTL 91


>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
             marker CA125 protein.
          Length = 22152

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 45    LYWSLSACWHYLXXIXMYSLRRSFLMIRG 131
             LYW LS   H +  +  YSL R  L + G
Sbjct: 13413 LYWELSQLTHNITELGPYSLDRDSLYVNG 13441



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 45    LYWSLSACWHYLXXIXMYSLRRSFLMIRG 131
             LYW LS   H +  +  YSL R  L + G
Sbjct: 13569 LYWELSQLTHNITELGPYSLDRDSLYVNG 13597



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 45    LYWSLSACWHYLXXIXMYSLRRSFLMIRG 131
             LYW LS   H +  +  YSL R  L + G
Sbjct: 14349 LYWELSQLTHNITELGPYSLDRDSLYVNG 14377


>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
          Length = 6995

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 45   LYWSLSACWHYLXXIXMYSLRRSFLMIRG 131
            LYW LS   H +  +  YSL R  L + G
Sbjct: 4963 LYWELSQLTHNITELGPYSLDRDSLYVNG 4991


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,650,367
Number of Sequences: 237096
Number of extensions: 532921
Number of successful extensions: 784
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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