Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0614.Seq
(309 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M84739-1|AAA51916.1| 417|Homo sapiens calreticulin protein. 44 1e-04
M32294-1|AAA36582.1| 417|Homo sapiens protein ( Human Ro ribonu... 44 1e-04
CR457070-1|CAG33351.1| 417|Homo sapiens CALR protein. 44 1e-04
BT007448-1|AAP36116.1| 417|Homo sapiens calreticulin protein. 44 1e-04
BC020493-1|AAH20493.1| 417|Homo sapiens calreticulin protein. 44 1e-04
BC007911-1|AAH07911.1| 417|Homo sapiens calreticulin protein. 44 1e-04
BC002500-1|AAH02500.1| 417|Homo sapiens calreticulin protein. 44 1e-04
AY047586-1|AAL13126.1| 417|Homo sapiens calreticulin protein. 44 1e-04
AK223060-1|BAD96780.1| 406|Homo sapiens calreticulin precursor ... 44 1e-04
AD000092-6|AAB51176.1| 417|Homo sapiens calreticulin protein. 44 1e-04
BC014595-1|AAH14595.1| 384|Homo sapiens calreticulin 3 protein. 36 0.032
AK058084-1|BAB71655.1| 384|Homo sapiens protein ( Homo sapiens ... 36 0.032
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 28 6.4
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein. 28 6.4
>M84739-1|AAA51916.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
+FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45 DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73
>M32294-1|AAA36582.1| 417|Homo sapiens protein ( Human Ro
ribonucleoprotein autoantigen (Ro/SS-A), complete cds.
).
Length = 417
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
+FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45 DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73
>CR457070-1|CAG33351.1| 417|Homo sapiens CALR protein.
Length = 417
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
+FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45 DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73
>BT007448-1|AAP36116.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
+FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45 DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73
>BC020493-1|AAH20493.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
+FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45 DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73
>BC007911-1|AAH07911.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
+FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45 DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73
>BC002500-1|AAH02500.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
+FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45 DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73
>AY047586-1|AAL13126.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
+FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45 DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73
>AK223060-1|BAD96780.1| 406|Homo sapiens calreticulin precursor
variant protein.
Length = 406
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
+FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 34 DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 62
>AD000092-6|AAB51176.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
+FGKF L++GKF+ D + DKGL+T +DAR
Sbjct: 45 DFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73
>BC014595-1|AAH14595.1| 384|Homo sapiens calreticulin 3 protein.
Length = 384
Score = 35.5 bits (78), Expect = 0.032
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 171 FGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
FG F+L++GKF+ + DKGL+T ++ R
Sbjct: 46 FGHFRLSSGKFYGHKEKDKGLQTTQNGR 73
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +2
Query: 95 VFFEEKFPD-DSWESNWVYSXAPXKRIWKV*IDCWKVLQRPTG*QRFENL*RC*VYALSR 271
V+F+E+F D + W + W+ S R + K + + YA+S
Sbjct: 21 VYFQEEFLDGEHWRNRWLQS-TNDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGRFYAISA 79
Query: 272 XFKPXSXEGKPL 307
FKP S +GK L
Sbjct: 80 RFKPFSNKGKTL 91
>AK058084-1|BAB71655.1| 384|Homo sapiens protein ( Homo sapiens
cDNA FLJ25355 fis, clone TST01593. ).
Length = 384
Score = 35.5 bits (78), Expect = 0.032
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 171 FGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
FG F+L++GKF+ + DKGL+T ++ R
Sbjct: 46 FGHFRLSSGKFYGHKEKDKGLQTTQNGR 73
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +2
Query: 95 VFFEEKFPD-DSWESNWVYSXAPXKRIWKV*IDCWKVLQRPTG*QRFENL*RC*VYALSR 271
V+F+E+F D + W + W+ S R + K + + YA+S
Sbjct: 21 VYFQEEFLDGEHWRNRWLQS-TNDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGRFYAISA 79
Query: 272 XFKPXSXEGKPL 307
FKP S +GK L
Sbjct: 80 RFKPFSNKGKTL 91
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 45 LYWSLSACWHYLXXIXMYSLRRSFLMIRG 131
LYW LS H + + YSL R L + G
Sbjct: 13413 LYWELSQLTHNITELGPYSLDRDSLYVNG 13441
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 45 LYWSLSACWHYLXXIXMYSLRRSFLMIRG 131
LYW LS H + + YSL R L + G
Sbjct: 13569 LYWELSQLTHNITELGPYSLDRDSLYVNG 13597
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 45 LYWSLSACWHYLXXIXMYSLRRSFLMIRG 131
LYW LS H + + YSL R L + G
Sbjct: 14349 LYWELSQLTHNITELGPYSLDRDSLYVNG 14377
>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
Length = 6995
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 45 LYWSLSACWHYLXXIXMYSLRRSFLMIRG 131
LYW LS H + + YSL R L + G
Sbjct: 4963 LYWELSQLTHNITELGPYSLDRDSLYVNG 4991
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,650,367
Number of Sequences: 237096
Number of extensions: 532921
Number of successful extensions: 784
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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