Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0614.Seq
         (309 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X64461-1|CAA45791.1|  406|Drosophila melanogaster calreticulin p...    50   4e-07
BT001670-1|AAN71425.1|  406|Drosophila melanogaster RE50082p pro...    50   4e-07
AE014297-990|AAF54416.1|  406|Drosophila melanogaster CG9429-PA ...    50   4e-07
AB000718-1|BAA85379.1|  406|Drosophila melanogaster calreticulin...    50   4e-07
BT022781-1|AAY55197.1|  148|Drosophila melanogaster IP14431p pro...    29   1.5  
BT022754-1|AAY55170.1|  148|Drosophila melanogaster IP14731p pro...    29   1.5  
BT022746-1|AAY55162.1|  148|Drosophila melanogaster IP14631p pro...    29   1.5  
S72379-1|AAB20671.1|  453|Drosophila melanogaster vestigial prot...    28   2.7  
AE013599-1607|AAF58444.1|  453|Drosophila melanogaster CG3830-PA...    28   2.7  
BT001704-1|AAN71459.1|  699|Drosophila melanogaster RE64196p pro...    27   3.6  
AY075576-1|AAL68381.1|  400|Drosophila melanogaster SD05875p pro...    27   3.6  
AY051565-1|AAK92989.1|  496|Drosophila melanogaster GH21352p pro...    27   3.6  
AE014298-2532|AAF48704.1|  496|Drosophila melanogaster CG8918-PA...    27   3.6  
AE014297-3693|AAN14033.1|  400|Drosophila melanogaster CG31110-P...    27   3.6  

>X64461-1|CAA45791.1|  406|Drosophila melanogaster calreticulin
           protein.
          Length = 406

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +3

Query: 153 EHPXKEFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +HP KEFGKF LT G F++D + DKG++T +DAR
Sbjct: 40  KHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDAR 73



 Score = 39.1 bits (87), Expect = 0.001
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +2

Query: 92  DVFFEEKFPDDSWESNWVYSXAPXKRIWKV*IDCWKVLQRPTG*QRFENL*RC*VYALSR 271
           +V+ +E F +++WE  W+YS  P K   K  +            +  +       YA SR
Sbjct: 20  EVYLKENFDNENWEDTWIYSKHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASR 79

Query: 272 XFKPXSXEGKPL 307
            F   S E KPL
Sbjct: 80  KFDGFSNEDKPL 91


>BT001670-1|AAN71425.1|  406|Drosophila melanogaster RE50082p
           protein.
          Length = 406

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +3

Query: 153 EHPXKEFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +HP KEFGKF LT G F++D + DKG++T +DAR
Sbjct: 40  KHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDAR 73



 Score = 39.1 bits (87), Expect = 0.001
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +2

Query: 92  DVFFEEKFPDDSWESNWVYSXAPXKRIWKV*IDCWKVLQRPTG*QRFENL*RC*VYALSR 271
           +V+ +E F +++WE  W+YS  P K   K  +            +  +       YA SR
Sbjct: 20  EVYLKENFDNENWEDTWIYSKHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASR 79

Query: 272 XFKPXSXEGKPL 307
            F   S E KPL
Sbjct: 80  KFDGFSNEDKPL 91


>AE014297-990|AAF54416.1|  406|Drosophila melanogaster CG9429-PA
           protein.
          Length = 406

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +3

Query: 153 EHPXKEFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +HP KEFGKF LT G F++D + DKG++T +DAR
Sbjct: 40  KHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDAR 73



 Score = 39.1 bits (87), Expect = 0.001
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +2

Query: 92  DVFFEEKFPDDSWESNWVYSXAPXKRIWKV*IDCWKVLQRPTG*QRFENL*RC*VYALSR 271
           +V+ +E F +++WE  W+YS  P K   K  +            +  +       YA SR
Sbjct: 20  EVYLKENFDNENWEDTWIYSKHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASR 79

Query: 272 XFKPXSXEGKPL 307
            F   S E KPL
Sbjct: 80  KFDGFSNEDKPL 91


>AB000718-1|BAA85379.1|  406|Drosophila melanogaster calreticulin
           protein.
          Length = 406

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +3

Query: 153 EHPXKEFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +HP KEFGKF LT G F++D + DKG++T +DAR
Sbjct: 40  KHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDAR 73



 Score = 39.1 bits (87), Expect = 0.001
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +2

Query: 92  DVFFEEKFPDDSWESNWVYSXAPXKRIWKV*IDCWKVLQRPTG*QRFENL*RC*VYALSR 271
           +V+ +E F +++WE  W+YS  P K   K  +            +  +       YA SR
Sbjct: 20  EVYLKENFDNENWEDTWIYSKHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASR 79

Query: 272 XFKPXSXEGKPL 307
            F   S E KPL
Sbjct: 80  KFDGFSNEDKPL 91


>BT022781-1|AAY55197.1|  148|Drosophila melanogaster IP14431p
           protein.
          Length = 148

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 253 LASSXVFKPLSSCGSLKNFPAVNLNFPNSFXGCSTVHPIA 134
           LA + VF PL S  S  NFP  +   P  +  C  V P+A
Sbjct: 76  LAMAFVFSPLRSSDSSANFPGSSGALP-PYGHCFLVEPVA 114


>BT022754-1|AAY55170.1|  148|Drosophila melanogaster IP14731p
           protein.
          Length = 148

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 253 LASSXVFKPLSSCGSLKNFPAVNLNFPNSFXGCSTVHPIA 134
           LA + VF PL S  S  NFP  +   P  +  C  V P+A
Sbjct: 76  LAMAFVFSPLRSSDSSANFPGSSGALP-PYGHCFLVEPVA 114


>BT022746-1|AAY55162.1|  148|Drosophila melanogaster IP14631p
           protein.
          Length = 148

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 253 LASSXVFKPLSSCGSLKNFPAVNLNFPNSFXGCSTVHPIA 134
           LA + VF PL S  S  NFP  +   P  +  C  V P+A
Sbjct: 76  LAMAFVFSPLRSSDSSANFPGSSGALP-PYGHCFLVEPVA 114


>S72379-1|AAB20671.1|  453|Drosophila melanogaster vestigial
           protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 196 PAVNLNFPNSFXGCSTVHPIAFP 128
           P  N NFP SF   + VHPI  P
Sbjct: 323 PMSNRNFPPSFWNSNYVHPIPAP 345


>AE013599-1607|AAF58444.1|  453|Drosophila melanogaster CG3830-PA
           protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 196 PAVNLNFPNSFXGCSTVHPIAFP 128
           P  N NFP SF   + VHPI  P
Sbjct: 323 PMSNRNFPPSFWNSNYVHPIPAP 345


>BT001704-1|AAN71459.1|  699|Drosophila melanogaster RE64196p
           protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 283 RFEXTGXSIDLASSXVFKPLSSCGSLKNFPAV 188
           R+E  G  IDL +  +F   S+  + +NFP+V
Sbjct: 175 RWEINGTVIDLVNIHLFHDASNLAACENFPSV 206


>AY075576-1|AAL68381.1|  400|Drosophila melanogaster SD05875p
           protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 283 RFEXTGXSIDLASSXVFKPLSSCGSLKNFPAV 188
           R+E  G  IDL +  +F   S+  + +NFP+V
Sbjct: 175 RWEINGTVIDLVNIHLFHDASNLAACENFPSV 206


>AY051565-1|AAK92989.1|  496|Drosophila melanogaster GH21352p
           protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 143 PNCFPTNHQETSPQ-RIHXNXXKIMPAS*QRPVQQL 39
           PNC P  H + +P   +  N   +MP S  +P +Q+
Sbjct: 414 PNCMPNEHWDKTPNPELLKNFTVLMPISPCKPKEQV 449


>AE014298-2532|AAF48704.1|  496|Drosophila melanogaster CG8918-PA
           protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 143 PNCFPTNHQETSPQ-RIHXNXXKIMPAS*QRPVQQL 39
           PNC P  H + +P   +  N   +MP S  +P +Q+
Sbjct: 414 PNCMPNEHWDKTPNPELLKNFTVLMPISPCKPKEQV 449


>AE014297-3693|AAN14033.1|  400|Drosophila melanogaster CG31110-PA
           protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 283 RFEXTGXSIDLASSXVFKPLSSCGSLKNFPAV 188
           R+E  G  IDL +  +F   S+  + +NFP+V
Sbjct: 175 RWEINGTVIDLVNIHLFHDASNLAACENFPSV 206


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,918,502
Number of Sequences: 53049
Number of extensions: 166164
Number of successful extensions: 372
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 589756776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)