Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0614.Seq
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...    38   0.001
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...    38   0.001
Z81526-1|CAB04264.1|  816|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z79596-4|CAB01856.2|  554|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z79596-3|CAI79132.1|  561|Caenorhabditis elegans Hypothetical pr...    27   2.0  
AF038618-2|AAB92072.1|  487|Caenorhabditis elegans Hypothetical ...    26   6.2  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FG FKL+AGKFF     D+G++T +DA+
Sbjct: 40  DFGAFKLSAGKFFDVESRDQGIQTSQDAK 68



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 92  DVFFEEKFPDDSWESNWVYS 151
           +V+F+E+F D SWE  WV S
Sbjct: 16  EVYFKEEFNDASWEKRWVQS 35


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 EFGKFKLTAGKFFSDPQDDKGLKTXEDAR 254
           +FG FKL+AGKFF     D+G++T +DA+
Sbjct: 40  DFGAFKLSAGKFFDVESRDQGIQTSQDAK 68



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 92  DVFFEEKFPDDSWESNWVYS 151
           +V+F+E+F D SWE  WV S
Sbjct: 16  EVYFKEEFNDASWEKRWVQS 35


>Z81526-1|CAB04264.1|  816|Caenorhabditis elegans Hypothetical
           protein F33H2.2 protein.
          Length = 816

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 129 HESSGNFSSKNTSQXXEDNASKLTTTSTTAFIFDS 25
           + S  +F S +TSQ   D +    T +  AFIFDS
Sbjct: 376 NNSVESFQSLSTSQTASDLSGSSGTVNRAAFIFDS 410


>Z79596-4|CAB01856.2|  554|Caenorhabditis elegans Hypothetical
           protein C02C6.2b protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 101 FEEKFPDDSWESNWVY--SXAPXKRIWKV*IDC 193
           FE+ FPDDS  S+++   S  P +   KV IDC
Sbjct: 362 FEKFFPDDSGASSFIVPSSFLPKQHETKVNIDC 394


>Z79596-3|CAI79132.1|  561|Caenorhabditis elegans Hypothetical
           protein C02C6.2a protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 101 FEEKFPDDSWESNWVY--SXAPXKRIWKV*IDC 193
           FE+ FPDDS  S+++   S  P +   KV IDC
Sbjct: 369 FEKFFPDDSGASSFIVPSSFLPKQHETKVNIDC 401


>AF038618-2|AAB92072.1|  487|Caenorhabditis elegans Hypothetical
           protein F42G8.8 protein.
          Length = 487

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 VEHPXKEFGKFKLTAGKFFSDPQDDKGL 233
           ++HP  E G   L     ++DP D +GL
Sbjct: 204 IDHPLFEIGNDSLAQDLLWADPTDGQGL 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,695,591
Number of Sequences: 27780
Number of extensions: 86999
Number of successful extensions: 211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)