Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0614.Seq
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   0.84 
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   0.84 
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    23   0.84 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.5  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    20   7.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   7.8  

>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 161 WVLXCTPNCFPTNHQETS-PQRIHXNXXKIMPAS*QRPVQQLSFSIHSTTF 12
           W + CT + FP  H E S  +R + +   ++P+  +  +   +F   S +F
Sbjct: 12  WFIACT-HSFPGAHDEDSKEERKNVDTVLVLPSIERDQMMAATFDFPSLSF 61


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 161 WVLXCTPNCFPTNHQETS-PQRIHXNXXKIMPAS*QRPVQQLSFSIHSTTF 12
           W + CT + FP  H E S  +R + +   ++P+  +  +   +F   S +F
Sbjct: 12  WFIACT-HSFPGAHDEDSKEERKNVDTVLVLPSIERDQMMAATFDFPSLSF 61


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 161 WVLXCTPNCFPTNHQETS-PQRIHXNXXKIMPAS*QRPVQQLSFSIHSTTF 12
           W + CT + FP  H E S  +R + +   ++P+  +  +   +F   S +F
Sbjct: 12  WFIACT-HSFPGAHDEDSKEERKNVDTVLVLPSIERDQMMAATFDFPSLSF 61


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 134 SNWVYSXAPXKRIWKV*IDCWKVLQRPTG 220
           S  V   +  KR+    +D + VL+RP G
Sbjct: 15  SGLVNGGSHEKRLLNDLLDTYNVLERPVG 43


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 129 HESSGNFSSKNTSQXXEDNASKLTTTSTTA 40
           HE   N+ SKN +Q   +    +   S TA
Sbjct: 184 HEKLRNWFSKNVNQTVAETVRIIYGGSVTA 213


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +2

Query: 170 IWKV*IDCWKVL 205
           +W + I CW+V+
Sbjct: 821 VWSMGIVCWEVM 832


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,694
Number of Sequences: 438
Number of extensions: 1306
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)