Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0614.Seq
(309 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi... 32 0.090
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi... 32 0.090
At4g12020.1 68417.m01912 protein kinase family protein similar t... 31 0.12
At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr... 29 0.48
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q... 29 0.48
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 27 3.4
At4g13810.1 68417.m02140 disease resistance family protein / LRR... 26 5.9
At2g35940.2 68415.m04412 homeodomain-containing protein contains... 26 5.9
At2g35940.1 68415.m04411 homeodomain-containing protein contains... 26 5.9
At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR... 25 7.8
At4g16890.1 68417.m02549 disease resistance protein (TIR-NBS-LRR... 25 7.8
At3g58750.1 68416.m06548 citrate synthase, glyoxysomal, putative... 25 7.8
At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransfera... 25 7.8
>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 370
Score = 31.9 bits (69), Expect = 0.090
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 174 GKFKLTAGKFFSDPQDDKGLKTXEDAR 254
G FK TAGK+ DP D+KG++T DA+
Sbjct: 57 GTFKHTAGKWPGDP-DNKGIQTYNDAK 82
>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 424
Score = 31.9 bits (69), Expect = 0.090
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 174 GKFKLTAGKFFSDPQDDKGLKTXEDAR 254
G FK TAGK+ DP D+KG++T DA+
Sbjct: 57 GTFKHTAGKWPGDP-DNKGIQTYNDAK 82
>At4g12020.1 68417.m01912 protein kinase family protein similar to
mitogen-activated protein kinase [Arabidopsis thaliana]
GI:1255448; contains Pfam profiles PF02671: Paired
amphipathic helix repeat, PF03106: WRKY DNA-binding
domain, PF00560: Leucine Rich Repeat, PF00069: Protein
kinase domain, PF00931: NB-ARC domain
Length = 1798
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -3
Query: 283 RFEXTGXSIDLASSXVFKPLSSCGSLKNFPAVNLNFPNSFXGCSTVHPIAFPRIIRKLLL 104
+ E +DL S V LS C L NFP ++ N + G + + I P I+ L+L
Sbjct: 1317 KLENIPSMVDLESLEVLN-LSGCSKLGNFPEISPNVKELYMGGTMIQEI--PSSIKNLVL 1373
Query: 103 KEYIXI 86
E + +
Sbjct: 1374 LEKLDL 1379
>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
Length = 425
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 92 DVFFEEKFPDDSWESNWVYS 151
+V FEEKF +D WE WV S
Sbjct: 23 EVIFEEKF-EDGWEKRWVKS 41
>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
SP|Q38858 Calreticulin 2 precursor {Arabidopsis
thaliana}
Length = 424
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 95 VFFEEKFPDDSWESNWVYS 151
V FEE+F DD WE+ WV S
Sbjct: 24 VIFEERF-DDGWENRWVKS 41
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 271 TGXSIDLASSXVFKPLSSCGSLKNFPAVNLNFPNSFXGCSTVHPIAFPRIIRKLLLKEYI 92
TG ++D S + LS C LK FP ++ N + + + + P I KL L Y+
Sbjct: 809 TGINLD---SLISLDLSHCSQLKTFPDISTNISDLNLSYTAIEEV--PLSIEKLSLLCYL 863
>At4g13810.1 68417.m02140 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 741
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Frame = -3
Query: 256 DLASSXVFKPLSSCG-------SLKNFPAVNLNFPNSFXGCSTVHPIAFPRIIRKLLLKE 98
D+ +F PL S G +LK V+L P + G + + FP+ +R E
Sbjct: 220 DIVDLSIFSPLLSLGYLDVSGINLKISSTVSLPSPIEYLGLLSCNISEFPKFLRNQTSLE 279
Query: 97 YIXI 86
Y+ I
Sbjct: 280 YLDI 283
>At2g35940.2 68415.m04412 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 126 ESSGNFSSKNTSQXXEDNASKLTTTSTTAFIFDSQYHL 13
++ G+ Q ED+ASK T+ + + D+ YH+
Sbjct: 461 KNMGSMEKTPLDQSNEDSASKSTSNQEKSPMADTNYHM 498
>At2g35940.1 68415.m04411 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 126 ESSGNFSSKNTSQXXEDNASKLTTTSTTAFIFDSQYHL 13
++ G+ Q ED+ASK T+ + + D+ YH+
Sbjct: 461 KNMGSMEKTPLDQSNEDSASKSTSNQEKSPMADTNYHM 498
>At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1261
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 226 LSSCGSLKNFPAVNLN 179
LS C SL++FP VN N
Sbjct: 806 LSGCSSLESFPEVNQN 821
>At4g16890.1 68417.m02549 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1301
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 247 SSXVFKPLSSCGSLKNFPAVNLN 179
SS + LS C SL+ FP ++ N
Sbjct: 1000 SSLMILDLSGCSSLRTFPLISTN 1022
>At3g58750.1 68416.m06548 citrate synthase, glyoxysomal, putative
strong similarity to SP|P49299 Citrate synthase,
glyoxysomal precursor {Cucurbita maxima}; contains Pfam
profile PF00285: Citrate synthase
Length = 514
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +3
Query: 117 LMIRGKAIGCTVEHPXKEFGKFKLTAGKFFSDPQDDKGLKTXEDARSMLXPVXSN 281
L I + G + P E G K K + +DDKGLK + PV S+
Sbjct: 54 LTIVDERTGKKYQVPVSEHGTVKAVDLKKITTGKDDKGLKLYDPGYLNTAPVRSS 108
>At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransferase,
putative similar to polynucleotide phosphorylase
GB:AAC50039 [Pisum sativum], identical to putative
polynucleotide phosphorylase GB:AAF00646 [Arabidopsis
thaliana]
Length = 922
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 58 NDQYNSFHFRFTVPPSS 8
+D+Y F+ ++T PPSS
Sbjct: 503 SDEYKRFYLQYTFPPSS 519
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,377,077
Number of Sequences: 28952
Number of extensions: 81512
Number of successful extensions: 191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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