Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0613.Seq
(489 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 156 3e-37
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 95 7e-19
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 71 1e-11
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 70 3e-11
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 59 5e-08
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 59 5e-08
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 59 5e-08
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 56 6e-07
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 52 7e-06
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 47 3e-04
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 46 5e-04
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 44 0.002
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 43 0.003
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 42 0.006
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 41 0.013
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 40 0.039
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 39 0.052
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 39 0.069
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.091
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 38 0.12
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 38 0.16
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 37 0.21
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 36 0.37
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 36 0.37
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 36 0.37
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 36 0.48
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 36 0.64
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 36 0.64
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.64
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 35 0.84
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 35 0.84
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 35 0.84
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 35 1.1
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 35 1.1
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 35 1.1
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 1.5
UniRef50_A2DX13 Cluster: PIKK family atypical protein kinase; n=... 34 1.5
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 34 2.0
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 34 2.0
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 34 2.0
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 33 2.6
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 33 2.6
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 33 3.4
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 33 3.4
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 33 3.4
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 33 4.5
UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, wh... 33 4.5
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 33 4.5
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 32 6.0
UniRef50_Q9C2M7 Cluster: Related to HFB30; n=2; Sordariales|Rep:... 32 7.9
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 32 7.9
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 156 bits (378), Expect = 3e-37
Identities = 74/84 (88%), Positives = 79/84 (94%), Gaps = 1/84 (1%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRP 75
QTQVFK GLAKSIHHAR+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFSL+SP+GGGRP
Sbjct: 111 QTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRP 170
Query: 74 GRVKRKNLRKGQGG-GAANDEEED 6
GRVKRKN +KGQGG GA +DEEED
Sbjct: 171 GRVKRKNAKKGQGGAGAGDDEEED 194
Score = 91.1 bits (216), Expect = 1e-17
Identities = 43/53 (81%), Positives = 49/53 (92%)
Frame = -3
Query: 391 EKDPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLRRRCSKL 233
EKDP+RLF+GNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRL+ + KL
Sbjct: 65 EKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKL 117
Score = 45.6 bits (103), Expect = 6e-04
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = -1
Query: 477 GLXNKRXVWRVKYTLAGIRKAAREXXXXXXXTPR 376
GL NKR VWRVK+TLA IRKAARE PR
Sbjct: 36 GLRNKREVWRVKFTLAKIRKAARELLTLDEKDPR 69
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 95.1 bits (226), Expect = 7e-19
Identities = 50/84 (59%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRP 75
QTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS KH DF GGG P
Sbjct: 116 QTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRKHTDFFRHCLNGGGYP 175
Query: 74 GRVKRKNLRKGQGG-GAANDEEED 6
G VKRKN++KG+GG GA +DEEED
Sbjct: 176 GSVKRKNVKKGRGGAGAGDDEEED 199
Score = 38.3 bits (85), Expect = 0.091
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Frame = -3
Query: 391 EKDPKRLFKGNALLRRLVRIGVLDEKQMK------LDYVLGLKIEDFLERRLRRRCSKL 233
EKDP+ LF+ N LLR+LV G+L E +MK + GL+I F E++L+ + +L
Sbjct: 65 EKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQVFEL 122
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 71.3 bits (167), Expect = 1e-11
Identities = 35/56 (62%), Positives = 40/56 (71%)
Frame = -2
Query: 176 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGAANDEEE 9
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN + GGG +EEE
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGGDGEEEEE 82
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 69.7 bits (163), Expect = 3e-11
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 93
LL QT V++ G AKSIHHAR+LIR + I+V KQVV++PSF+VR++S I + +P
Sbjct: 104 LLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTP 163
Query: 92 FGGGR-PGRVKRKNLRKGQ 39
GR KRKN G+
Sbjct: 164 LTNPEINGRRKRKNNHAGK 182
Score = 58.0 bits (134), Expect = 1e-07
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = -3
Query: 388 KDPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
KDPKRL +G ALLRRL +G+L Q KL++VL LK E+ LERRL+
Sbjct: 65 KDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQ 110
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 59.3 bits (137), Expect = 5e-08
Identities = 30/59 (50%), Positives = 40/59 (67%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
+L QT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+ I FSL S
Sbjct: 106 ILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDNEIFISFSLNS 164
Score = 33.5 bits (73), Expect = 2.6
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -1
Query: 477 GLXNKRXVWRVKYTLAGIRKAAREXXXXXXXTPRDCSKVMPFYVVWFVLEYWMKNR*NSI 298
GL NKR +WR ++ L+ +RK A + + S+ + ++WF +Y N N
Sbjct: 37 GLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLEKIPSQ--SYGILWFCYKYNFMN--NMT 92
Query: 297 MCL 289
CL
Sbjct: 93 FCL 95
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 59.3 bits (137), Expect = 5e-08
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = -3
Query: 391 EKDPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
EK+P+R+F+G ALLR + R G+L E Q KLDYVL L +E+FL+ RL+
Sbjct: 55 EKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQ 101
Score = 38.3 bits (85), Expect = 0.091
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHI 180
QT VFK G KSIHH +LIRQ HI
Sbjct: 101 QTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 59.3 bits (137), Expect = 5e-08
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 87
Q +VF AGLAKS+HHAR+LI R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 115 QFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 55.6 bits (128), Expect = 6e-07
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = -2
Query: 152 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 27
PSF+VR+DS K D SL SP GGGRPGRVK+K+L+ K GGA
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLKVAAKEAAGGA 68
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 52.0 bits (119), Expect = 7e-06
Identities = 26/65 (40%), Positives = 43/65 (66%)
Frame = +3
Query: 36 TLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMM 215
T S + L ++ +++TEWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S ++
Sbjct: 10 TTSSSSSLSGHSTWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVV 69
Query: 216 DGLRQ 230
+ L Q
Sbjct: 70 NRLGQ 74
Score = 41.9 bits (94), Expect = 0.007
Identities = 19/42 (45%), Positives = 32/42 (76%)
Frame = +2
Query: 254 ETTLQEVLNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQSL 379
+++ QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQSL
Sbjct: 83 QSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSL 124
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 46.8 bits (106), Expect = 3e-04
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG-GGR 78
QT VF+ GLA++ AR LI HI V +VV PS++V ++ I ++ SPF
Sbjct: 108 QTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNH 167
Query: 77 PGRVK 63
P R K
Sbjct: 168 PERAK 172
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 46.0 bits (104), Expect = 5e-04
Identities = 27/54 (50%), Positives = 30/54 (55%)
Frame = +1
Query: 91 NGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNTCV 252
+G+ KSMC S RT G FT CL TRI RIK A D ARP+L T V
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSV 111
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 44.0 bits (99), Expect = 0.002
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRP 75
QT V+K GLA++I+ AR LI HI + + V P +IV IDF SPF P
Sbjct: 107 QTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPP 166
Query: 74 GRVKRKNLRK 45
+ +N+++
Sbjct: 167 TQQGEENVQQ 176
Score = 37.9 bits (84), Expect = 0.12
Identities = 16/43 (37%), Positives = 30/43 (69%)
Frame = -3
Query: 379 KRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
+R + L+++L R+G++++ LD +LGL E++LERRL+
Sbjct: 65 ERSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQ 107
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 43.2 bits (97), Expect = 0.003
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
QT V++ GLAKSIHHAR LI H+ V + V P F+V
Sbjct: 109 QTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 42.3 bits (95), Expect = 0.006
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = -2
Query: 191 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGA 27
+R R R+ + IP + VR++ K IDFS GGGRPGRVKRK L+ A
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLKVAAKKVA 189
Query: 26 ANDEE 12
D++
Sbjct: 190 GEDDD 194
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 41.1 bits (92), Expect = 0.013
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 93
QT + + GLAK++ AR I HI V +VV+ PS++V+ + I+F SP
Sbjct: 105 QTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 39.5 bits (88), Expect = 0.039
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I +S
Sbjct: 100 VFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEITIKPES 147
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 39.1 bits (87), Expect = 0.052
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 93
QTQV + GLA+++ AR I HI + + IP +V + HI + SP
Sbjct: 115 QTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 38.7 bits (86), Expect = 0.069
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
+++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 139 IYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 38.3 bits (85), Expect = 0.091
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -2
Query: 134 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 27
+DS KH DFSL SP G R +VKRK L+ K GGA
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLKVAAKKAAGGA 39
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 37.9 bits (84), Expect = 0.12
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = -3
Query: 364 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
G + RL RIG+L E++ +LD VL L++ D LERRL+
Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQ 103
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 37.5 bits (83), Expect = 0.16
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 93
QT VF+ GLA + AR I HI V + +N PS++V L I + SP
Sbjct: 107 QTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 37.1 bits (82), Expect = 0.21
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 99 VYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 36.3 bits (80), Expect = 0.37
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
+F+ GLA++ AR ++ +H+ V + VNIPS++V+
Sbjct: 77 IFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVK 113
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 36.3 bits (80), Expect = 0.37
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
QT VFK GLA++I AR LI I V + V+IP ++V
Sbjct: 104 QTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGYMV 142
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 36.3 bits (80), Expect = 0.37
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
+L + V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 85 ILESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 35.9 bits (79), Expect = 0.48
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 456 VWRVKYTLAGIRKAAREXXXXXXXTPR 376
VWRVK+TLA IRKAARE PR
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPR 27
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 35.5 bits (78), Expect = 0.64
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -3
Query: 322 DEKQMKLDYVLGLKIEDFLERRLR 251
D ++ KLDYVL L +E+FLERRL+
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQ 40
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 35.5 bits (78), Expect = 0.64
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 93
LL VF+AG A S AR ++R +HI + + V+IPS+ ++ G I KS
Sbjct: 96 LLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDVISLREKSR 153
Query: 92 FGGG 81
G
Sbjct: 154 ANAG 157
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 35.5 bits (78), Expect = 0.64
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
VF+ +A +I AR LI HIRV + VNIPS++ +
Sbjct: 116 VFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMCK 152
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 35.1 bits (77), Expect = 0.84
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
LL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 82 LLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 35.1 bits (77), Expect = 0.84
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 108
Q+ VFK GL+ + AR+ + HI + + +N P +V ++IDF
Sbjct: 106 QSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154
Score = 31.9 bits (69), Expect = 7.9
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -3
Query: 379 KRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
+R K LL LVR G + KL+ VL L +ED L RRL+
Sbjct: 65 ERADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQ 106
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 35.1 bits (77), Expect = 0.84
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 99 VYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 34.7 bits (76), Expect = 1.1
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
LL A V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 89 LLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 34.7 bits (76), Expect = 1.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 155 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASETTLQE 271
CS L H +FWH GW+SP Q TPA+ ++ E
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAESVGE 126
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 34.7 bits (76), Expect = 1.1
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
V++ G + S AR L+ H+ V + VNIPSF+V G I+F KS
Sbjct: 99 VYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQIEFRQKS 146
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 1.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 228 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 133
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_A2DX13 Cluster: PIKK family atypical protein kinase; n=1;
Trichomonas vaginalis G3|Rep: PIKK family atypical
protein kinase - Trichomonas vaginalis G3
Length = 2006
Score = 34.3 bits (75), Expect = 1.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 316 KQMKLDYVLGLKIEDFLERRLRRRCSKLAWRSPSIMPEF*SGKGI 182
K++KLDY++ + D +E ++ ++C KL + P F GI
Sbjct: 886 KEIKLDYLMKRDLPDHIETKISQKCQKLRKSYSKVFPNFNDFSGI 930
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 33.9 bits (74), Expect = 2.0
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
+F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 81 LFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 33.9 bits (74), Expect = 2.0
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
LL + + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 90 LLESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 33.9 bits (74), Expect = 2.0
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 108
LL + + V +AGLA SI AR +R ++ V + +IPSF R+ G + F
Sbjct: 95 LLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVRF 147
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 33.5 bits (73), Expect = 2.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
+F G+A +I AR L+ RHI V +V+IPS+
Sbjct: 62 LFHLGMASTIPAARQLVNHRHILVNNCIVDIPSY 95
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 33.5 bits (73), Expect = 2.6
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = -3
Query: 355 LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
++++L +G+L E KL+ VL LK++D +ERRL+
Sbjct: 80 IVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQ 113
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 33.1 bits (72), Expect = 3.4
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
LL A V++ G A + AR L+ HIR+ + NIPS+ VR
Sbjct: 93 LLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYSVR 138
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 33.1 bits (72), Expect = 3.4
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 141
+F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 216 LFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 33.1 bits (72), Expect = 3.4
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
V++ G A + AR L+ H+ V + VNIPS++V + G I+ KS
Sbjct: 104 VYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIEIKEKS 151
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 32.7 bits (71), Expect = 4.5
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -2
Query: 266 GASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 120
G + TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 153 GTARLTQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, whole
genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_25, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1517
Score = 32.7 bits (71), Expect = 4.5
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -3
Query: 367 KGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 254
KGN+ L+RIG+LDE+ + + + + +ED + +L
Sbjct: 930 KGNSRQANLIRIGLLDEENIHSEIIKKVSLEDLAQHKL 967
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 32.7 bits (71), Expect = 4.5
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 144
+F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 95 LFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 32.3 bits (70), Expect = 6.0
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 272 LLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 135
+L A V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 95 ILEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_Q9C2M7 Cluster: Related to HFB30; n=2; Sordariales|Rep:
Related to HFB30 - Neurospora crassa
Length = 781
Score = 31.9 bits (69), Expect = 7.9
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 89 GGGRPGRVKRKNLRKGQGGGAAN 21
GGGR GR + N R GQG G AN
Sbjct: 648 GGGRGGRGRGDNARGGQGAGGAN 670
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 31.9 bits (69), Expect = 7.9
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 245 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
+F+ G AKSI+ AR LI I + +V PSFI+
Sbjct: 91 IFRLGFAKSINQARQLITHGFIFINSILVKKPSFIL 126
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,772,565
Number of Sequences: 1657284
Number of extensions: 9440775
Number of successful extensions: 27298
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 26351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27263
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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