Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0613.Seq
         (489 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    24   0.64 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   0.64 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   2.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.0  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.9  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 252 DAGVQSWPGEVHPSCQNFDPAKAYSCP 172
           +A V  W  +V P C+N + A  ++CP
Sbjct: 133 EARVCMWADQV-PECKNEEVAGGFTCP 158


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 252 DAGVQSWPGEVHPSCQNFDPAKAYSCP 172
           +A V  W  +V P C+N + A  ++CP
Sbjct: 133 EARVCMWADQV-PECKNEEVAGGFTCP 158


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -1

Query: 249 AGVQSWPGEVHPSCQNFDPAKAYSCPQAS 163
           AG+ SWP E      + +    + CP+ +
Sbjct: 148 AGICSWPDEAKKKGCSSEEVFQFECPKVN 176


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 44  GQGGGAANDEEED 6
           GQG    NDE++D
Sbjct: 189 GQGSSTNNDEDDD 201


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 44  GQGGGAANDEEED 6
           GQG    NDE++D
Sbjct: 189 GQGSSTNNDEDDD 201


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 44  GQGGGAANDEEED 6
           GQG    NDE++D
Sbjct: 189 GQGSSTNNDEDDD 201


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 83  GRPGRVKRKNLRKGQGGGAANDE 15
           G PG     ++  G+G G  +D+
Sbjct: 150 GSPGDASNASIGSGEGTGEEDDD 172


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 83  GRPGRVKRKNLRKGQGGGAANDE 15
           G PG     ++  G+G G  +D+
Sbjct: 306 GSPGDASNASIGSGEGTGEEDDD 328


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,552
Number of Sequences: 336
Number of extensions: 2185
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)