Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0613.Seq
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 132 3e-32
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 131 6e-32
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 27 1.1
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 27 2.0
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 26 2.7
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 25 4.6
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 6.1
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 132 bits (319), Expect = 3e-32
Identities = 60/83 (72%), Positives = 69/83 (83%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRP 75
QTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRP
Sbjct: 110 QTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRP 169
Query: 74 GRVKRKNLRKGQGGGAANDEEED 6
GR KRK LR Q GG + EE+
Sbjct: 170 GRCKRKRLRSQQEGGEGEEAEEE 192
Score = 87.0 bits (206), Expect = 1e-18
Identities = 39/53 (73%), Positives = 48/53 (90%)
Frame = -3
Query: 391 EKDPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLRRRCSKL 233
EKDPKRLF+GNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRL+ + KL
Sbjct: 64 EKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKL 116
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -1
Query: 477 GLXNKRXVWRVKYTLAGIRKAAREXXXXXXXTPR 376
GL NK +WRV TL+ IR+AARE P+
Sbjct: 35 GLRNKHEIWRVALTLSKIRRAARELLTLDEKDPK 68
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 131 bits (316), Expect = 6e-32
Identities = 60/82 (73%), Positives = 68/82 (82%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRP 75
QTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRP
Sbjct: 110 QTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRP 169
Query: 74 GRVKRKNLRKGQGGGAANDEEE 9
GR KRK LR +GG EEE
Sbjct: 170 GRCKRKRLRSQEGGEGEEAEEE 191
Score = 86.6 bits (205), Expect = 2e-18
Identities = 39/53 (73%), Positives = 48/53 (90%)
Frame = -3
Query: 391 EKDPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLRRRCSKL 233
EKDPKRLF+GNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRL+ + KL
Sbjct: 64 EKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKL 116
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -1
Query: 477 GLXNKRXVWRVKYTLAGIRKAAREXXXXXXXTPR 376
GL NK +WRV TL+ IR+AARE P+
Sbjct: 35 GLRNKHEIWRVALTLSKIRRAARELLTLDEKDPK 68
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 1.1
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -3
Query: 334 IGVLDEKQMKLDYVLGLKIEDFLERRLRRRCS---KLAWRSPSIMPEF*SGK 188
+G++ EK M+LD V G K+E ++RR + + W +I E+ S K
Sbjct: 101 MGLVGEK-MELDAVKGRKVESRVDRRKLEKAERKIRAKWEKRTIKAEYESSK 151
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -3
Query: 316 KQMKLDYVLGLKIEDFLERRLRRRCSKLAWRSPSIMPEF*SGK 188
+ ++L + G+ ++ E R R+ SK+ W + +P F K
Sbjct: 169 QNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNK 211
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -1
Query: 132 GLWQAH*LLSEISIRWRSSWTCQEEEPPQGTGWR 31
G + A +L ++S W+ +W +E++ WR
Sbjct: 383 GRYIAQRILGDLSEEWKDAWRWREDDKASELKWR 416
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.4 bits (53), Expect = 4.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 385 DPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 254
DP RL N LL +L +G+L K D + RRL
Sbjct: 68 DPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRL 111
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 156 HPIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEE 55
HP + GL Q H + ++ W SSW ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,755
Number of Sequences: 5004
Number of extensions: 36264
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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