Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0613.Seq
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 135 2e-32
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 135 2e-32
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 130 8e-31
07_03_1357 - 25982861-25983068,25983354-25983361 73 9e-14
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 59 2e-09
12_02_0441 + 19115990-19116478 31 0.50
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 0.87
07_03_0366 + 17321948-17322331 29 1.5
02_03_0357 + 18075171-18077240 29 2.0
08_01_0568 - 5052608-5052937 28 3.5
03_02_0167 - 6088818-6089870 28 3.5
03_05_0862 + 28353235-28354431 28 4.6
12_02_0071 + 13207111-13207280,13208100-13208251,13208728-13208903 27 6.1
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 27 6.1
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 27 8.1
05_05_0313 - 24026142-24026708 27 8.1
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 27 8.1
03_06_0653 - 35305279-35306163 27 8.1
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 135 bits (327), Expect = 2e-32
Identities = 61/83 (73%), Positives = 72/83 (86%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRP 75
QT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG P
Sbjct: 112 QTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPP 171
Query: 74 GRVKRKNLRKGQGGGAANDEEED 6
GRVKRKN +K GGG +EE++
Sbjct: 172 GRVKRKNQKKASGGGGDGEEEDE 194
Score = 61.7 bits (143), Expect = 3e-10
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = -3
Query: 391 EKDPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
EK+P+R+F+G ALLRR+ R G+L + Q KLDYVL L +E+FL RRL+
Sbjct: 66 EKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQ 112
Score = 31.1 bits (67), Expect = 0.50
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 477 GLXNKRXVWRVKYTLAGIRKAAREXXXXXXXTPR 376
GL KR +WRV+Y L+ IR AR PR
Sbjct: 37 GLRCKRELWRVQYALSRIRNNARHLLTLDEKNPR 70
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 135 bits (327), Expect = 2e-32
Identities = 61/83 (73%), Positives = 72/83 (86%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRP 75
QT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG P
Sbjct: 135 QTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPP 194
Query: 74 GRVKRKNLRKGQGGGAANDEEED 6
GRVKRKN +K GGG +EE++
Sbjct: 195 GRVKRKNQKKASGGGGDGEEEDE 217
Score = 61.7 bits (143), Expect = 3e-10
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = -3
Query: 391 EKDPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
EK+P+R+F+G ALLRR+ R G+L + Q KLDYVL L +E+FL RRL+
Sbjct: 89 EKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQ 135
Score = 31.1 bits (67), Expect = 0.50
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 477 GLXNKRXVWRVKYTLAGIRKAAREXXXXXXXTPR 376
GL KR +WRV+Y L+ IR AR PR
Sbjct: 60 GLRCKRELWRVQYALSRIRNNARHLLTLDEKNPR 93
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 130 bits (313), Expect = 8e-31
Identities = 59/75 (78%), Positives = 67/75 (89%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRP 75
QT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG P
Sbjct: 328 QTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPP 387
Query: 74 GRVKRKNLRKGQGGG 30
GRVKRKN +K GGG
Sbjct: 388 GRVKRKNQKKASGGG 402
Score = 61.7 bits (143), Expect = 3e-10
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = -3
Query: 391 EKDPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
EK+P+R+F+G ALLRR+ R G+L + Q KLDYVL L +E+FL RRL+
Sbjct: 282 EKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQ 328
Score = 31.1 bits (67), Expect = 0.50
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 477 GLXNKRXVWRVKYTLAGIRKAAREXXXXXXXTPR 376
GL KR +WRV+Y L+ IR AR PR
Sbjct: 253 GLRCKRELWRVQYALSRIRNNARHLLTLDEKNPR 286
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 73.3 bits (172), Expect = 9e-14
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = -2
Query: 179 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGAANDEEE 9
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN + GGG +EEE
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGGDGEEEEE 59
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = -3
Query: 391 EKDPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLR 251
EK+P+R+F+G ALLR + R G+L E Q KLDYVL L +E+FL+ RL+
Sbjct: 55 EKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQ 101
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = -2
Query: 254 QTQVFKAGLAKSIHHARILIRQRHI 180
QT VFK G KSIHH +LIRQ HI
Sbjct: 101 QTIVFKNGTVKSIHHDHVLIRQHHI 125
>12_02_0441 + 19115990-19116478
Length = 162
Score = 31.1 bits (67), Expect = 0.50
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = -2
Query: 155 IPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGAANDEEED 6
+ +F++RL K I K+ GGG GR K+ KG+GGG ++EEE+
Sbjct: 108 VKTFVIRLVE-KVIGLE-KNGRGGGGGGRKKK---GKGKGGGGEDEEEEE 152
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 0.87
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 89 GGGRPGRVKRKNLRKGQGGG 30
G RPG RKN +GQGGG
Sbjct: 1369 GSSRPGEWNRKNNNRGQGGG 1388
>07_03_0366 + 17321948-17322331
Length = 127
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 125 GKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGAANDE 15
G ++ +S GGG R +R+ R+G GGGA E
Sbjct: 32 GDTVEAERQSRHGGGGRRRRQRRGRRRGSGGGAMEAE 68
>02_03_0357 + 18075171-18077240
Length = 689
Score = 29.1 bits (62), Expect = 2.0
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = -2
Query: 275 GLLGASSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV----RLDSGKHIDF 108
G G+SS + +AG+A + AR+ RH+ VR V P+ + RL G D
Sbjct: 138 GGAGSSSSSTAGRAGVAVQLAMARLEEELRHLMVRHAVPLDPTGLFFSLRRLSLGSMDDL 197
Query: 107 SLKSPFGGGRP 75
S F P
Sbjct: 198 DTSSEFDAATP 208
>08_01_0568 - 5052608-5052937
Length = 109
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 92 FGGGRPGRVKRKNLRKGQGGGAANDEE 12
+GGGRPG + RK + GG A D E
Sbjct: 80 WGGGRPGGGSKAEGRKRRWGGTAADAE 106
>03_02_0167 - 6088818-6089870
Length = 350
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 101 KSPFGGGRPGRVKRKNLRKGQGGGAANDEEED 6
K P GGG GR + G+ GG ++EEED
Sbjct: 103 KLPAGGGHRGR----QVLSGRSGGGVDEEEED 130
>03_05_0862 + 28353235-28354431
Length = 398
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 155 IPSFIVRLDSGKHIDFSLKSPFG--GGRPGRVKRKNLRKGQGGGAANDEEE 9
IPS R ++ F ++SP G GGR G ++ + LR G DEEE
Sbjct: 247 IPSVTRRPNAYVERSFLVESPPGSAGGRRGLMQVELLRPVAASGGGEDEEE 297
>12_02_0071 + 13207111-13207280,13208100-13208251,13208728-13208903
Length = 165
Score = 27.5 bits (58), Expect = 6.1
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = -1
Query: 357 PFYVVWFVLEYWMKNR*NSIMCLV*RLRTSWSVVSDAGVQSWPGEVHPSCQNFDPAKAYS 178
P+ WF E K R + + R+ V+ A VQ W + + N D A+A
Sbjct: 55 PWRWTWFSPETLAKRR--YLGSALRRVTVFKGVIVAAPVQHWARLLPRTPYNIDRARATV 112
Query: 177 CPQASCEHPII 145
CP + P+I
Sbjct: 113 CPSQAVNPPLI 123
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 246 GVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPIIYCA 136
G SW CQ++DPAK Y+ Q H I+ A
Sbjct: 400 GNLSWRSREFLDCQSYDPAKVYNFIQTGV-HGRIFAA 435
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -2
Query: 122 KHIDFSLKSPFGGGRP--GRVKRK-NLRKGQGGGAANDEEE 9
KHI +L GGG+P G + + + G GGG A D E
Sbjct: 113 KHIKATLAKRLGGGKPKEGTIPEEGGVGAGGGGGGAADGAE 153
>05_05_0313 - 24026142-24026708
Length = 188
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 86 GGRPGRVKRKNLRKGQGGGAANDEEE 9
GG GR+ RK +G GGG E
Sbjct: 22 GGGAGRMHRKGKHQGDGGGGGGKRRE 47
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 251 TQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 138
T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 86 TVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>03_06_0653 - 35305279-35306163
Length = 294
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 122 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 30
K++ L GG+P R +R +R GGG
Sbjct: 19 KYLQRKLWKRINGGKPRRKRRPEVRSASGGG 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,138,635
Number of Sequences: 37544
Number of extensions: 288173
Number of successful extensions: 1034
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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