Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0613.Seq
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             153   7e-38
SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)                    28   3.6  
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   4.7  
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   8.3  
SB_19085| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  153 bits (371), Expect = 7e-38
 Identities = 68/83 (81%), Positives = 76/83 (91%)
 Frame = -2

Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRP 75
           QTQVFK GLAKSIHHAR+LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFSL SP+GGGRP
Sbjct: 108 QTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRP 167

Query: 74  GRVKRKNLRKGQGGGAANDEEED 6
           GRVKRKN++KGQGG    DE+ED
Sbjct: 168 GRVKRKNMKKGQGGSGGEDEDED 190



 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 42/53 (79%), Positives = 48/53 (90%)
 Frame = -3

Query: 391 EKDPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLRRRCSKL 233
           EKDP+RLF+GNALLRRLVRIGVLDE + KLDYVLGL+IEDFLERRL+ +  KL
Sbjct: 62  EKDPRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKL 114



 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 22/34 (64%), Positives = 22/34 (64%)
 Frame = -1

Query: 477 GLXNKRXVWRVKYTLAGIRKAAREXXXXXXXTPR 376
           GL NKR VWRVK TLA IRKAARE        PR
Sbjct: 33  GLRNKREVWRVKLTLAKIRKAARELLTLEEKDPR 66


>SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 3/30 (10%)
 Frame = -2

Query: 89  GGGRPG--RVKRKNLRKGQGG-GAANDEEE 9
           GG  PG  RVK++ +++G+G  GAA +EEE
Sbjct: 298 GGKNPGLLRVKKRTVKRGKGNRGAALNEEE 327


>SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
 Frame = -1

Query: 270 SWSVVSDAGVQSWPGEVHPSC-------QNFDPAKAYSCPQASCEHPIIYCAPGLWQ 121
           +W+ +S+  + +W    H +C        +FD +KAY    +S  + +++  PGL+Q
Sbjct: 445 TWASLSEKNM-TWDQNSHKTCFIDDGNPVSFDGSKAYEVLNSSGTNHVVFSKPGLYQ 500


>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
          Length = 1191

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 242 TPASETTLQEVLNLQTKHIIEFHLFFIQYSNTNQ 343
           TP+SE+ L  ++N+++   +  H  FI+Y +T+Q
Sbjct: 699 TPSSESPLHVMVNVKSSTEMMVHWKFIEYFDTSQ 732


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 110  FSLKSPFGGGRPGRVKRKNLRKGQGGGAA 24
            F L  PF  G PGR+ ++N+ + + GG A
Sbjct: 1096 FELLKPFIFGYPGRLGQRNVARVRAGGGA 1124


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 155 CSQLACGHEYAFAGSKFWHDGWTSP 229
           C++LA    Y++ G +FW + W+ P
Sbjct: 72  CARLAEQKNYSYFGVQFWGECWSGP 96


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = -1

Query: 210  CQNFDPAKAYSCPQASCEHP-IIYCAPGLWQAH*LLSEISIRWRSSWTCQEEEPPQG 43
            C NFD    + C   S  H   IYC  G       L  +++     W C+ + P  G
Sbjct: 953  CMNFDGG--FGCRPGSESHAGQIYCCLGALSITHSLHHVNVDMLGWWLCERQLPSGG 1007


>SB_19085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 74  GRVKRKNLRKGQGGGAANDEEED 6
           G V+ +++R+G GGG   DE E+
Sbjct: 337 GDVRSEHIRQGGGGGHGRDEHEE 359


>SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 260 SSQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 156
           +S  +VFK     +  HA I IRQ  I +R  ++N
Sbjct: 194 NSLVEVFKVNPHLTYQHAFIYIRQMAIHLRNAIIN 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,294,558
Number of Sequences: 59808
Number of extensions: 301252
Number of successful extensions: 716
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)