Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0613.Seq
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   138   2e-33
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    29   1.8  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   1.8  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   2.4  
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p...    27   7.3  
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p...    27   7.3  
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin...    27   7.3  
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr...    27   7.3  
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    27   7.3  
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    27   9.7  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  138 bits (334), Expect = 2e-33
 Identities = 63/80 (78%), Positives = 72/80 (90%)
 Frame = -2

Query: 254 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRP 75
           QTQVFK GLAKSIHHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRP
Sbjct: 110 QTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRP 169

Query: 74  GRVKRKNLRKGQGGGAANDE 15
           GRVKR+ LRKG G G  ++E
Sbjct: 170 GRVKRRTLRKGDGAGGDDEE 189



 Score = 90.2 bits (214), Expect = 7e-19
 Identities = 42/53 (79%), Positives = 49/53 (92%)
 Frame = -3

Query: 391 EKDPKRLFKGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLRRRCSKL 233
           +KDPKRLF+GNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRL+ +  KL
Sbjct: 64  DKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKL 116



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 21/34 (61%), Positives = 23/34 (67%)
 Frame = -1

Query: 477 GLXNKRXVWRVKYTLAGIRKAAREXXXXXXXTPR 376
           GL NKR VWRVKYTLA +RKAARE        P+
Sbjct: 35  GLKNKREVWRVKYTLAKVRKAARELLTLEDKDPK 68


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -2

Query: 233 GLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 96
           G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S
Sbjct: 118 GMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 244  TCV*DDAPRSPQSSDQAHNRVSSVFHPVLQYEPD 345
            +C+ D AP +P++  +  + + SV HP  +YE D
Sbjct: 2454 SCMMDVAPFTPETVAEKSSLIQSVLHPNNEYEHD 2487


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 244  TCV*DDAPRSPQSSDQAHNRVSSVFHPVLQYEPD 345
            +C+ D AP +P++  +  + + SV HP  +YE D
Sbjct: 2454 SCMMDVAPFTPETVAEKSSLIQSVLHPNNEYEHD 2487


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 155 CSQLACGHEYAFAGSKFWHDG 217
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 152 GCSQLACGHEYAFAGSKFWH 211
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
           protein 70, isoform a protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -1

Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
           protein 70, isoform b protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -1

Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
           protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -1

Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -1

Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -1

Query: 225 EVHPSCQNFDP------AKAYSCPQASCEHPII 145
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 256 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--L*TISWGPS 390
           +DA +  Q+S  A +  + ++H V + E    +GH+  + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,433,376
Number of Sequences: 27780
Number of extensions: 218168
Number of successful extensions: 625
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)