Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0612.Seq
         (485 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    48   9e-05
UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY0513...    44   0.002
UniRef50_Q6A278 Cluster: Putative exported protein precursor; n=...    33   4.5  
UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subuni...    33   4.5  
UniRef50_UPI0000F1F069 Cluster: PREDICTED: hypothetical protein;...    32   6.0  

>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 48.4 bits (110), Expect = 9e-05
 Identities = 23/32 (71%), Positives = 25/32 (78%)
 Frame = +1

Query: 388 GAPTARRTNATTSFLTATILVYAIGAGITAAA 483
           G P AR  + TTSFLTA  L+YAIGAGITAAA
Sbjct: 30  GGPPARSQDPTTSFLTAATLIYAIGAGITAAA 61


>UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY05130;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05130 - Plasmodium yoelii yoelii
          Length = 402

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +2

Query: 47  GKCFR*CSSCDDPRISPLTSQYECPQ 124
           GKCFR C S ++ RISPLTS+Y+CPQ
Sbjct: 259 GKCFRSCLSPENLRISPLTSEYKCPQ 284



 Score = 36.7 bits (81), Expect = 0.28
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 430 LTATILVYAIGAGITAAA 483
           LTATIL+YAIGAGITAAA
Sbjct: 314 LTATILIYAIGAGITAAA 331


>UniRef50_Q6A278 Cluster: Putative exported protein precursor; n=8;
           Pasteurellaceae|Rep: Putative exported protein precursor
           - Haemophilus influenzae
          Length = 246

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 285 VSVEVGRQFYLNKLE-CSKRAKNAA*IFRAWNNRI*SRFYFVGFQNSEVMIN 133
           +S   GR  Y  +LE C K   NA  + +  N++     YFVG +N+E + N
Sbjct: 144 ISERFGRVIYFTRLENCDKCEANADRVLQYVNDKTPIDIYFVGVKNNEQIYN 195


>UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subunit
           p20; n=1; Polaromonas naphthalenivorans CJ2|Rep:
           Peptidase C14, caspase catalytic subunit p20 -
           Polaromonas naphthalenivorans (strain CJ2)
          Length = 562

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 366 VSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWS 464
           V+  PR+R  D AA + NY L NR+N+ +  W+
Sbjct: 163 VNAPPRVRAADPAAVQANY-LANRSNYEVSQWT 194


>UniRef50_UPI0000F1F069 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 389

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 58  SLMFVLRRSKNFTSNVAIRMPPVIPINHYLG 150
           S+M V+ RS  FT    IR+PP+  I+H+LG
Sbjct: 20  SVMGVVERSAVFTRQRDIRLPPIPGISHHLG 50


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,751,854
Number of Sequences: 1657284
Number of extensions: 8037276
Number of successful extensions: 18485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18481
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)