Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0612.Seq
         (485 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.9  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   5.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 435 RNNFSIRYWSWNYRXC 482
           R+NF   +  WNY  C
Sbjct: 746 RHNFKGLHLDWNYPVC 761



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 426  LFNRNNFSIRYW 461
            +F   NFSI YW
Sbjct: 1615 VFYNANFSINYW 1626


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +1

Query: 334 TPAHRRYAPXTCQYHRGCGAPTARRTNATTSFLTATI 444
           T  +  Y P    Y  G G   A R    T   TAT+
Sbjct: 63  TTGYYPYDPALAAYGYGAGYDLAARRKNATRESTATL 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,366
Number of Sequences: 336
Number of extensions: 1948
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)