Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0612.Seq
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.28 
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    27   1.5  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   3.5  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   4.6  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.1  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   8.0  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   8.0  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = -3

Query: 171 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 19
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 202 TKYSSSIFSPL*AL*FVQVKLSAHLDTHRRAPR*DFD 312
           T + + I SPL      Q  LS H+ TH  AP   FD
Sbjct: 141 TDFEAGIDSPL----LCQASLSTHVKTHNNAPLTSFD 173


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 126 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 19
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 291 SSVSVEVGRQFYLNKLECSK 232
           S+ ++EVG  FYL K+  SK
Sbjct: 261 STTAIEVGHAFYLGKIYSSK 280


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 402 AAHKCNYELFNRNNFSIRYWSWNYR 476
           AA KC +E      FSI + S+N++
Sbjct: 73  AASKCEFEKIWSTTFSISFLSFNFK 97


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 163 NKIEPRSYSIIPCTKYSSSIFSP 231
           N ++P+S +++P T +  SI SP
Sbjct: 29  NPVKPQSSNVVPGTSHIGSIKSP 51


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 187 NMISVLFCWFSELRGND 137
           N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,151
Number of Sequences: 5004
Number of extensions: 33997
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)