Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0612.Seq
(485 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 4e-07
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.071
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.29
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 29 1.5
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0) 29 2.7
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 6.2
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 51.2 bits (117), Expect = 4e-07
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -2
Query: 88 SWIVARRTSAKAFAKGVFINQERKLEVRR 2
SWI RRT+AKAFAK VFINQERKLE RR
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRR 32
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -2
Query: 73 RRTSAKAFAKGVFINQERKLEVRR 2
RRT+AKAFAK VFINQERKLE RR
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRR 32
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -2
Query: 73 RRTSAKAFAKGVFINQERKLEVRR 2
RRT+AKAFAK VFINQERKLE RR
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRR 32
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -2
Query: 73 RRTSAKAFAKGVFINQERKLEVRR 2
RRT+AKAFAK VFINQERKLE RR
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRR 32
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -2
Query: 73 RRTSAKAFAKGVFINQERKLEVRR 2
RRT+AKAFAK VFINQERKLE RR
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRR 34
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = -2
Query: 70 RTSAKAFAKGVFINQERKLEVRR 2
RT+AKAFAK VFINQERKLE RR
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRR 24
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = -2
Query: 70 RTSAKAFAKGVFINQERKLEVRR 2
RT+AKAFAK VFINQERKLE RR
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRR 51
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 95 VKFLDRRKTNISESICQRCFHQSRTKV 15
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 95 VKFLDRRKTNISESICQRCFHQSRTKV 15
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 33.9 bits (74), Expect = 0.071
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 95 VKFLDRRKTNISESICQRCFHQSRTKV 15
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = -2
Query: 73 RRTS-AKAFAKGVFINQERKLEVRR 2
R+T+ ++ + VFINQERKLE RR
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRR 32
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/25 (64%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = -2
Query: 73 RRTS-AKAFAKGVFINQERKLEVRR 2
R+T+ ++ AK VFINQERKLE RR
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRR 32
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 95 VKFLDRRKTNISESICQRCFHQSRTKV 15
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 92 KFLDRRKTNISESICQRCFHQSRTKV 15
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
Length = 111
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 452 YTKIVAVKKLVVAFVRRAVGAP 387
Y K+VAVKKLVV F VG P
Sbjct: 88 YIKVVAVKKLVVGFRDGTVGPP 109
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 452 YTKIVAVKKLVVAFVRRAVGAP 387
Y K+VAVKKLVV F VG P
Sbjct: 44 YIKVVAVKKLVVGFRDGTVGPP 65
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 452 YTKIVAVKKLVVAFVRRAVGAP 387
Y K+VAVKKLVV F VG P
Sbjct: 89 YIKVVAVKKLVVGFRDGTVGPP 110
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 452 YTKIVAVKKLVVAFVRRAVGAP 387
Y K+VAVKKLVV F VG P
Sbjct: 17 YIKVVAVKKLVVGFRDGTVGPP 38
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 452 YTKIVAVKKLVVAFVRRAVGAP 387
Y K+VAVKKLVV F VG P
Sbjct: 81 YIKVVAVKKLVVGFRDGTVGPP 102
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 452 YTKIVAVKKLVVAFVRRAVGAP 387
Y K+VAVKKLVV F VG P
Sbjct: 34 YIKVVAVKKLVVGFRDGTVGPP 55
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 452 YTKIVAVKKLVVAFVRRAVGAP 387
Y K+VAVKKLVV F VG P
Sbjct: 21 YIKVVAVKKLVVGFRDGTVGPP 42
>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
Length = 2376
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 191 LFHARNIQAAFLARFEHSNLFK*NCRPTSTLTEEHRDRILI 313
L RNI A L+R + LF NC T T T+E D +L+
Sbjct: 1478 LLRKRNIDADSLSRLKDIRLFMENC--TETATKEAIDSMLV 1516
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 156 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 46
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 375 SPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 473
S R+RCT S + KC + + F W S+NY
Sbjct: 147 SYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 77 DDPRISPLTSQYEC 118
DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,590,307
Number of Sequences: 59808
Number of extensions: 256527
Number of successful extensions: 589
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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