Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0612.Seq
(485 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U06469-1|AAA53215.1| 524|Homo sapiens HEAAC1 protein. 33 0.70
U08989-1|AAA68628.1| 524|Homo sapiens glutamate transporter pro... 32 0.93
AF074911-1|AAC27511.3| 524|Homo sapiens neuronal and epithelial... 32 0.93
U03506-1|AAA50430.1| 525|Homo sapiens excitatory amino acid tra... 31 1.6
AL162587-1|CAH71965.1| 524|Homo sapiens solute carrier family 1... 31 1.6
AL136231-6|CAI41264.1| 524|Homo sapiens solute carrier family 1... 31 1.6
AB008536-1|BAB83767.1| 524|Homo sapiens excitatory amino acid t... 31 1.6
BC033040-1|AAH33040.1| 524|Homo sapiens solute carrier family 1... 30 3.8
AK124536-1|BAC85877.1| 170|Homo sapiens PTPRF), interacting pro... 30 5.0
AL590452-8|CAH72528.1| 2240|Homo sapiens phosphodiesterase 4D in... 29 6.6
AL590452-4|CAH72524.1| 2346|Homo sapiens phosphodiesterase 4D in... 29 6.6
AL590452-3|CAH72523.1| 2362|Homo sapiens phosphodiesterase 4D in... 29 6.6
AL138796-7|CAI22827.1| 2240|Homo sapiens phosphodiesterase 4D in... 29 6.6
AL138796-4|CAI22824.1| 2346|Homo sapiens phosphodiesterase 4D in... 29 6.6
AL138796-3|CAI22823.1| 2362|Homo sapiens phosphodiesterase 4D in... 29 6.6
AB007923-1|BAA32299.2| 2296|Homo sapiens KIAA0454 protein protein. 29 6.6
>U06469-1|AAA53215.1| 524|Homo sapiens HEAAC1 protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.70
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 251 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 84
+N S + GL+ +L YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVLYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 83 DRRKTNISESICQRCFHQSRTK 18
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>U08989-1|AAA68628.1| 524|Homo sapiens glutamate transporter
protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.93
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = -1
Query: 251 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 84
+N S + GL++++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRVVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 83 DRRKTNISESICQRCFHQSRTK 18
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>AF074911-1|AAC27511.3| 524|Homo sapiens neuronal and epithelial
glutamate transporter protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.93
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = -1
Query: 251 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 84
+N S + GL++++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRVVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 83 DRRKTNISESICQRCFHQSRTK 18
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>U03506-1|AAA50430.1| 525|Homo sapiens excitatory amino acid
transporter3 protein.
Length = 525
Score = 31.5 bits (68), Expect = 1.6
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 251 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 84
+N S + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 85 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 144
Query: 83 DRRKTNISESICQRCFHQSRTK 18
D + E++ Q CF Q +TK
Sbjct: 145 DLIRNMFPENLVQACFQQYKTK 166
>AL162587-1|CAH71965.1| 524|Homo sapiens solute carrier family 1
(neuronal/epithelial highg) 1 protein.
Length = 524
Score = 31.5 bits (68), Expect = 1.6
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 251 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 84
+N S + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 83 DRRKTNISESICQRCFHQSRTK 18
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>AL136231-6|CAI41264.1| 524|Homo sapiens solute carrier family 1
(neuronal/epithelial highde 1 protein.
Length = 524
Score = 31.5 bits (68), Expect = 1.6
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 251 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 84
+N S + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 83 DRRKTNISESICQRCFHQSRTK 18
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>AB008536-1|BAB83767.1| 524|Homo sapiens excitatory amino acid
transporter-3 protein.
Length = 524
Score = 31.5 bits (68), Expect = 1.6
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 251 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 84
+N S + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 83 DRRKTNISESICQRCFHQSRTK 18
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>BC033040-1|AAH33040.1| 524|Homo sapiens solute carrier family 1
(neuronal/epithelial high affinity glutamate transporte
protein.
Length = 524
Score = 30.3 bits (65), Expect = 3.8
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 251 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXLEVK----FL 84
+N S + G++ ++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGVRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 83 DRRKTNISESICQRCFHQSRTK 18
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>AK124536-1|BAC85877.1| 170|Homo sapiens PTPRF), interacting
protein (liprin), alpha 2 protein.
Length = 170
Score = 29.9 bits (64), Expect = 5.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 357 SXNVSVSPRMRCTDSAAHKCNYELFNRNNF 446
S +++ PR++C+ + CN+EL +NF
Sbjct: 9 SQGLALLPRLKCSGAIIAHCNFELLGSSNF 38
>AL590452-8|CAH72528.1| 2240|Homo sapiens phosphodiesterase 4D
interacting protein (myomegalin) protein.
Length = 2240
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 242 SNLFK*NCRPTST-LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGA 409
S++++ N +PT L EEH I L +R E +D LR+++ + R RG+
Sbjct: 1723 SSVYQLNSKPTGADLLEEHLGEIRNLRQRLEESICINDRLREQLEHRLTSTARGRGS 1779
>AL590452-4|CAH72524.1| 2346|Homo sapiens phosphodiesterase 4D
interacting protein (myomegalin) protein.
Length = 2346
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 242 SNLFK*NCRPTST-LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGA 409
S++++ N +PT L EEH I L +R E +D LR+++ + R RG+
Sbjct: 1829 SSVYQLNSKPTGADLLEEHLGEIRNLRQRLEESICINDRLREQLEHRLTSTARGRGS 1885
>AL590452-3|CAH72523.1| 2362|Homo sapiens phosphodiesterase 4D
interacting protein (myomegalin) protein.
Length = 2362
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 242 SNLFK*NCRPTST-LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGA 409
S++++ N +PT L EEH I L +R E +D LR+++ + R RG+
Sbjct: 1829 SSVYQLNSKPTGADLLEEHLGEIRNLRQRLEESICINDRLREQLEHRLTSTARGRGS 1885
>AL138796-7|CAI22827.1| 2240|Homo sapiens phosphodiesterase 4D
interacting protein (myomegalin) protein.
Length = 2240
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 242 SNLFK*NCRPTST-LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGA 409
S++++ N +PT L EEH I L +R E +D LR+++ + R RG+
Sbjct: 1723 SSVYQLNSKPTGADLLEEHLGEIRNLRQRLEESICINDRLREQLEHRLTSTARGRGS 1779
>AL138796-4|CAI22824.1| 2346|Homo sapiens phosphodiesterase 4D
interacting protein (myomegalin) protein.
Length = 2346
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 242 SNLFK*NCRPTST-LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGA 409
S++++ N +PT L EEH I L +R E +D LR+++ + R RG+
Sbjct: 1829 SSVYQLNSKPTGADLLEEHLGEIRNLRQRLEESICINDRLREQLEHRLTSTARGRGS 1885
>AL138796-3|CAI22823.1| 2362|Homo sapiens phosphodiesterase 4D
interacting protein (myomegalin) protein.
Length = 2362
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 242 SNLFK*NCRPTST-LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGA 409
S++++ N +PT L EEH I L +R E +D LR+++ + R RG+
Sbjct: 1829 SSVYQLNSKPTGADLLEEHLGEIRNLRQRLEESICINDRLREQLEHRLTSTARGRGS 1885
>AB007923-1|BAA32299.2| 2296|Homo sapiens KIAA0454 protein protein.
Length = 2296
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 242 SNLFK*NCRPTST-LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADAVHRQRGA 409
S++++ N +PT L EEH I L +R E +D LR+++ + R RG+
Sbjct: 1779 SSVYQLNSKPTGADLLEEHLGEIRNLRQRLEESICINDRLREQLEHRLTSTARGRGS 1835
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,699,448
Number of Sequences: 237096
Number of extensions: 1194720
Number of successful extensions: 2273
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2266
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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